RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 FYB1O15117 783 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 ADAMTS8Q9UP79 889 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 BRD4O60885 1362 aaPredicted RBP14.34□□□□□ -0.11
SYNE1-204ENST00000367248 NAIPQ13075 1403 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 APPP05067 770 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 TCP11L2Q8N4U5 519 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 PRDM11Q9NQV5 511 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 ZC3H6P61129 1189 aaKnown RBP14.34□□□□□ -0.11
SYNE1-204ENST00000367248 ANKRD45Q5TZF3 282 aa14.34□□□□□ -0.11
SYNE1-204ENST00000367248 ERBINQ96RT1 1412 aa14.33□□□□□ -0.11
SYNE1-204ENST00000367248 CRBNQ96SW2 442 aa14.33□□□□□ -0.12
SYNE1-204ENST00000367248 FOXD4L1Q9NU39 408 aa14.33□□□□□ -0.12
SYNE1-204ENST00000367248 DHX16O60231 1041 aaKnown RBP14.33□□□□□ -0.12
SYNE1-204ENST00000367248 SLKQ9H2G2 1235 aaPredicted RBP14.33□□□□□ -0.12
SYNE1-204ENST00000367248 WWC1Q8IX03 1113 aa14.33□□□□□ -0.12
SYNE1-204ENST00000367248 RIC3Q7Z5B4 369 aa14.32□□□□□ -0.12
SYNE1-204ENST00000367248 KIF16BQ96L93 1317 aa14.32□□□□□ -0.12
SYNE1-204ENST00000367248 GAS2L2Q8NHY3 880 aa14.32□□□□□ -0.12
SYNE1-204ENST00000367248 PRM3Q9NNZ6 103 aa14.32□□□□□ -0.12
SYNE1-204ENST00000367248 PRKAR2BP31323 418 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 NRDCO43847 1150 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 ADGRL1O94910 1474 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 GOLGA6L6A8MZA4 724 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 RTEL1-TNFRSF6BF6WH68 1400 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 GBP4Q96PP9 640 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 MTMR7Q9Y216 660 aa14.31□□□□□ -0.12
SYNE1-204ENST00000367248 HTATSF1O43719 755 aaKnown RBP14.29□□□□□ -0.12
SYNE1-204ENST00000367248 PLEKHO1Q53GL0 409 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-204ENST00000367248 ATAD2Q6PL18 1390 aa14.29□□□□□ -0.12
SYNE1-204ENST00000367248 FOXD4L5Q5VV16 416 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-204ENST00000367248 FOXD4L4Q8WXT5 416 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-204ENST00000367248 ABCC5O15440 1437 aa14.29□□□□□ -0.12
SYNE1-204ENST00000367248 CCDC27Q2M243 656 aa14.28□□□□□ -0.12
SYNE1-204ENST00000367248 SLC4A3P48751 1232 aa14.28□□□□□ -0.12
SYNE1-204ENST00000367248 AMOTL1Q8IY63 956 aa14.28□□□□□ -0.12
SYNE1-204ENST00000367248 DRC7Q8IY82 874 aa14.28□□□□□ -0.12
SYNE1-204ENST00000367248 NEUROD6Q96NK8 337 aa14.28□□□□□ -0.12
SYNE1-204ENST00000367248 BICDL1Q6ZP65 573 aa14.27□□□□□ -0.12
SYNE1-204ENST00000367248 TCEAL9Q9UHQ7 104 aa14.27□□□□□ -0.12
SYNE1-204ENST00000367248 G3BP1Q13283 466 aaKnown RBP eCLIP14.26□□□□□ -0.13
SYNE1-204ENST00000367248 DIAPH3Q9NSV4 1193 aa14.26□□□□□ -0.13
SYNE1-204ENST00000367248 CCDC61Q9Y6R9 512 aa14.26□□□□□ -0.13
SYNE1-204ENST00000367248 ST18O60284 1047 aa14.26□□□□□ -0.13
SYNE1-204ENST00000367248 NGLY1Q96IV0 654 aa14.26□□□□□ -0.13
SYNE1-204ENST00000367248 IFIT2P09913 472 aaKnown RBP14.25□□□□□ -0.13
SYNE1-204ENST00000367248 CAMSAP2Q08AD1 1489 aa14.25□□□□□ -0.13
SYNE1-204ENST00000367248 TATP17735 454 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-204ENST00000367248 LRRFIP1Q32MZ4 808 aaKnown RBP14.25□□□□□ -0.13
SYNE1-204ENST00000367248 HSP90AB4PQ58FF6 505 aa14.24□□□□□ -0.13
SYNE1-204ENST00000367248 SULT6B1Q6IMI4 303 aa14.24□□□□□ -0.13
SYNE1-204ENST00000367248 DENND4BO75064 1496 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-204ENST00000367248 FBXO31Q5XUX0 539 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-204ENST00000367248 FAM161AQ3B820 660 aa14.24□□□□□ -0.13
SYNE1-204ENST00000367248 KIF3AQ9Y496 699 aa14.24□□□□□ -0.13
SYNE1-204ENST00000367248 AKNAQ7Z591 1439 aa14.24□□□□□ -0.13
SYNE1-204ENST00000367248 CUL7Q14999 1698 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 IDI1Q13907 227 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 PTMSP20962 102 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 CABP4P57796 275 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 NCOA1Q15788 1441 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 NUDT16Q96DE0 195 aaKnown RBP14.23□□□□□ -0.13
SYNE1-204ENST00000367248 PPP6R1Q9UPN7 881 aa14.23□□□□□ -0.13
SYNE1-204ENST00000367248 FOXD4L6Q3SYB3 417 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-204ENST00000367248 FOXD4L3Q6VB84 417 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-204ENST00000367248 AAMPQ13685 434 aa14.22□□□□□ -0.13
SYNE1-204ENST00000367248 RUFY2Q8WXA3 655 aa14.22□□□□□ -0.13
SYNE1-204ENST00000367248 PDE4AP27815 886 aa14.22□□□□□ -0.13
SYNE1-204ENST00000367248 AKAP17AQ02040 695 aaKnown RBP14.22□□□□□ -0.13
SYNE1-204ENST00000367248 EXOSC9Q06265 439 aaKnown RBP14.21□□□□□ -0.13
SYNE1-204ENST00000367248 SMG6Q86US8 1419 aaKnown RBP14.21□□□□□ -0.13
SYNE1-204ENST00000367248 PCF11O94913 1555 aaKnown RBP14.21□□□□□ -0.13
SYNE1-204ENST00000367248 ZNF530Q6P9A1 599 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-204ENST00000367248 MAP3K1Q13233 1512 aa14.21□□□□□ -0.14
SYNE1-204ENST00000367248 KIF6Q6ZMV9 814 aa14.21□□□□□ -0.14
SYNE1-204ENST00000367248 CCDC34Q96HJ3 373 aa14.21□□□□□ -0.14
SYNE1-204ENST00000367248 IPO9Q96P70 1041 aaKnown RBP14.21□□□□□ -0.14
SYNE1-204ENST00000367248 CCDC30Q5VVM6 783 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 DHX29Q7Z478 1369 aaKnown RBP14.2□□□□□ -0.14
SYNE1-204ENST00000367248 UBAP1LF5GYI3 381 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 UBTFL1P0CB47 393 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-204ENST00000367248 CDCA7LQ96GN5 454 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 PANK1Q8TE04 598 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 KDM4AO75164 1064 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 CCAR1Q8IX12 1150 aaKnown RBP14.2□□□□□ -0.14
SYNE1-204ENST00000367248 TSHZ2Q9NRE2 1034 aa14.2□□□□□ -0.14
SYNE1-204ENST00000367248 SUPT6HQ7KZ85 1726 aaKnown RBP14.2□□□□□ -0.14
SYNE1-204ENST00000367248 REC8O95072 547 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 TWISTNBQ3B726 338 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-204ENST00000367248 L1TD1Q5T7N2 865 aaKnown RBP14.19□□□□□ -0.14
SYNE1-204ENST00000367248 FOXO3O43524 673 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 WAPLQ7Z5K2 1190 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 CHMP4CQ96CF2 233 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 FANCAO15360 1455 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 GNAI3P08754 354 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 MYL6BP14649 208 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 IKQ13123 557 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-204ENST00000367248 RRS1Q15050 365 aaKnown RBP14.19□□□□□ -0.14
SYNE1-204ENST00000367248 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
SYNE1-204ENST00000367248 ZKSCAN1P17029 563 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms