RNA–Protein interactions for RNA: ENST00000361909.8

CMTM3-201, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-201ENST00000361909 KDM5AP29375 1690 aaKnown RBP24.85■■□□□ 1.57
CMTM3-201ENST00000361909 TNRQ92752 1358 aa24.85■■□□□ 1.57
CMTM3-201ENST00000361909 FER1L4A9Z1Z3 1794 aa24.84■■□□□ 1.57
CMTM3-201ENST00000361909 TMF1P82094 1093 aa24.83■■□□□ 1.57
CMTM3-201ENST00000361909 ADGRB1O14514 1584 aa24.83■■□□□ 1.57
CMTM3-201ENST00000361909 BRPF3Q9ULD4 1205 aa24.82■■□□□ 1.56
CMTM3-201ENST00000361909 CNGB1Q14028 1251 aaPredicted RBP24.81■■□□□ 1.56
CMTM3-201ENST00000361909 CENPQQ7L2Z9 268 aaPredicted RBP24.8■■□□□ 1.56
CMTM3-201ENST00000361909 KDM2BQ8NHM5 1336 aa24.8■■□□□ 1.56
CMTM3-201ENST00000361909 MYO3AQ8NEV4 1616 aa24.8■■□□□ 1.56
CMTM3-201ENST00000361909 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.79■■□□□ 1.56
CMTM3-201ENST00000361909 C3P01024 1663 aa24.79■■□□□ 1.56
CMTM3-201ENST00000361909 RSPH6AQ9H0K4 717 aa24.78■■□□□ 1.56
CMTM3-201ENST00000361909 NLRP1Q9C000 1473 aa24.78■■□□□ 1.56
CMTM3-201ENST00000361909 FAM43AQ8N2R8 423 aa24.77■■□□□ 1.56
CMTM3-201ENST00000361909 FRAT1Q92837 279 aaPredicted RBP24.77■■□□□ 1.56
CMTM3-201ENST00000361909 DISP3Q9P2K9 1392 aa24.77■■□□□ 1.56
CMTM3-201ENST00000361909 CDCA8Q53HL2 280 aa24.77■■□□□ 1.56
CMTM3-201ENST00000361909 NUTM2DQ5VT03 806 aaPredicted RBP24.77■■□□□ 1.56
CMTM3-201ENST00000361909 VIRMAQ69YN4 1812 aaKnown RBP24.77■■□□□ 1.56
CMTM3-201ENST00000361909 FAM161AQ3B820 660 aa24.76■■□□□ 1.55
CMTM3-201ENST00000361909 SBNO2Q9Y2G9 1366 aa24.76■■□□□ 1.55
CMTM3-201ENST00000361909 RIMS2Q9UQ26 1411 aa24.76■■□□□ 1.55
CMTM3-201ENST00000361909 CRBNQ96SW2 442 aa24.76■■□□□ 1.55
CMTM3-201ENST00000361909 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.75■■□□□ 1.55
CMTM3-201ENST00000361909 HDGFP51858 240 aaKnown RBP24.74■■□□□ 1.55
CMTM3-201ENST00000361909 UBR1Q8IWV7 1749 aa24.73■■□□□ 1.55
CMTM3-201ENST00000361909 TMEM132EQ6IEE7 984 aa24.7■■□□□ 1.54
CMTM3-201ENST00000361909 CEBPAP49715 358 aaPredicted RBP24.69■■□□□ 1.54
CMTM3-201ENST00000361909 CENPJQ9HC77 1338 aaPredicted RBP24.69■■□□□ 1.54
CMTM3-201ENST00000361909 ALKQ9UM73 1620 aa24.69■■□□□ 1.54
CMTM3-201ENST00000361909 SENP3-EIF4A1A0A087X0R7 540 aa24.69■■□□□ 1.54
CMTM3-201ENST00000361909 CDCA7LQ96GN5 454 aa24.67■■□□□ 1.54
CMTM3-201ENST00000361909 TRAK1Q9UPV9 953 aa24.67■■□□□ 1.54
CMTM3-201ENST00000361909 TMEM2Q9UHN6 1383 aa24.67■■□□□ 1.54
CMTM3-201ENST00000361909 ASXL1Q8IXJ9 1541 aa24.66■■□□□ 1.54
CMTM3-201ENST00000361909 ADAMTSL3P82987 1691 aa24.66■■□□□ 1.54
CMTM3-201ENST00000361909 PER1O15534 1290 aaPredicted RBP24.65■■□□□ 1.54
CMTM3-201ENST00000361909 C8orf34Q49A92 452 aa24.65■■□□□ 1.54
CMTM3-201ENST00000361909 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.65■■□□□ 1.54
CMTM3-201ENST00000361909 ARHGEF28Q8N1W1 1705 aaKnown RBP24.65■■□□□ 1.54
CMTM3-201ENST00000361909 QRICH2Q9H0J4 1663 aa24.64■■□□□ 1.53
CMTM3-201ENST00000361909 PLIN1O60240 522 aa24.63■■□□□ 1.53
CMTM3-201ENST00000361909 SETD1AO15047 1707 aaKnown RBP24.61■■□□□ 1.53
CMTM3-201ENST00000361909 YTHDC2Q9H6S0 1430 aaKnown RBP24.61■■□□□ 1.53
CMTM3-201ENST00000361909 RIMS1Q86UR5 1692 aaKnown RBP24.61■■□□□ 1.53
CMTM3-201ENST00000361909 NRXN3Q9Y4C0 1643 aa24.59■■□□□ 1.53
CMTM3-201ENST00000361909 PUS7Q96PZ0 661 aaKnown RBP24.59■■□□□ 1.53
CMTM3-201ENST00000361909 SLIT1O75093 1534 aa24.58■■□□□ 1.53
CMTM3-201ENST00000361909 PTPRMP28827 1452 aa24.58■■□□□ 1.52
CMTM3-201ENST00000361909 ARHGAP23Q9P227 1491 aa24.57■■□□□ 1.52
CMTM3-201ENST00000361909 PANK3Q9H999 370 aa24.56■■□□□ 1.52
CMTM3-201ENST00000361909 DLC1Q96QB1 1528 aa24.55■■□□□ 1.52
CMTM3-201ENST00000361909 FRAT2O75474 233 aaPredicted RBP24.55■■□□□ 1.52
CMTM3-201ENST00000361909 THEMISQ8N1K5 641 aaPredicted RBP24.55■■□□□ 1.52
CMTM3-201ENST00000361909 MYOM1P52179 1685 aa24.55■■□□□ 1.52
CMTM3-201ENST00000361909 EIF5BO60841 1220 aaKnown RBP24.54■■□□□ 1.52
CMTM3-201ENST00000361909 SLC4A3P48751 1232 aa24.54■■□□□ 1.52
CMTM3-201ENST00000361909 PLEKHG1Q9ULL1 1385 aa24.54■■□□□ 1.52
CMTM3-201ENST00000361909 L1TD1Q5T7N2 865 aaKnown RBP24.53■■□□□ 1.52
CMTM3-201ENST00000361909 ABCC11Q96J66 1382 aa24.53■■□□□ 1.52
CMTM3-201ENST00000361909 STK26Q9P289 416 aa24.52■■□□□ 1.52
CMTM3-201ENST00000361909 EID1Q9Y6B2 187 aa24.52■■□□□ 1.52
CMTM3-201ENST00000361909 EVC2Q86UK5 1308 aa24.52■■□□□ 1.52
CMTM3-201ENST00000361909 SETD1BQ9UPS6 1966 aaKnown RBP24.5■■□□□ 1.51
CMTM3-201ENST00000361909 C20orf194Q5TEA3 1177 aa24.5■■□□□ 1.51
CMTM3-201ENST00000361909 TXNDC2Q86VQ3 553 aa24.5■■□□□ 1.51
CMTM3-201ENST00000361909 SKAP1Q86WV1 359 aa24.5■■□□□ 1.51
CMTM3-201ENST00000361909 ZNF521Q96K83 1311 aa24.49■■□□□ 1.51
CMTM3-201ENST00000361909 LTKP29376 864 aa24.49■■□□□ 1.51
CMTM3-201ENST00000361909 DUSP27Q5VZP5 1158 aa24.49■■□□□ 1.51
CMTM3-201ENST00000361909 PLPPR3Q6T4P5 718 aa24.49■■□□□ 1.51
CMTM3-201ENST00000361909 CEP170BQ9Y4F5 1589 aaPredicted RBP24.49■■□□□ 1.51
CMTM3-201ENST00000361909 BECN1Q14457 450 aa24.48■■□□□ 1.51
CMTM3-201ENST00000361909 SIRT1Q96EB6 747 aa24.48■■□□□ 1.51
CMTM3-201ENST00000361909 SENP3Q9H4L4 574 aaPredicted RBP24.48■■□□□ 1.51
CMTM3-201ENST00000361909 PRAM1Q96QH2 718 aa24.47■■□□□ 1.51
CMTM3-201ENST00000361909 ADAMTS13Q76LX8 1427 aa24.47■■□□□ 1.51
CMTM3-201ENST00000361909 METP08581 1390 aa24.47■■□□□ 1.51
CMTM3-201ENST00000361909 NINLQ9Y2I6 1382 aa24.47■■□□□ 1.51
CMTM3-201ENST00000361909 TULP4Q9NRJ4 1543 aa24.47■■□□□ 1.51
CMTM3-201ENST00000361909 KNDC1Q76NI1 1749 aa24.46■■□□□ 1.51
CMTM3-201ENST00000361909 POGKQ9P215 609 aa24.46■■□□□ 1.51
CMTM3-201ENST00000361909 TECPR2O15040 1411 aa24.46■■□□□ 1.51
CMTM3-201ENST00000361909 ZNF142P52746 1687 aaPredicted RBP24.46■■□□□ 1.51
CMTM3-201ENST00000361909 MED14O60244 1454 aa24.45■■□□□ 1.5
CMTM3-201ENST00000361909 GOLGA2Q08379 1002 aa24.44■■□□□ 1.5
CMTM3-201ENST00000361909 KNSTRNQ9Y448 316 aa24.44■■□□□ 1.5
CMTM3-201ENST00000361909 MAPK8IP3Q9UPT6 1336 aa24.44■■□□□ 1.5
CMTM3-201ENST00000361909 NPC1L1Q9UHC9 1359 aa24.43■■□□□ 1.5
CMTM3-201ENST00000361909 PLEKHH1Q9ULM0 1364 aa24.43■■□□□ 1.5
CMTM3-201ENST00000361909 CC2D1BQ5T0F9 858 aaKnown RBP24.43■■□□□ 1.5
CMTM3-201ENST00000361909 FAM135BQ49AJ0 1406 aa24.43■■□□□ 1.5
CMTM3-201ENST00000361909 WDR43Q15061 677 aaKnown RBP eCLIP24.4■■□□□ 1.5
CMTM3-201ENST00000361909 NKTRP30414 1462 aaKnown RBP24.4■■□□□ 1.5
CMTM3-201ENST00000361909 DIP2AQ14689 1571 aa24.4■■□□□ 1.5
CMTM3-201ENST00000361909 CPS1P31327 1500 aa24.4■■□□□ 1.5
CMTM3-201ENST00000361909 TBX22Q9Y458 520 aa24.39■■□□□ 1.5
CMTM3-201ENST00000361909 SAFB2Q14151 953 aaKnown RBP eCLIP24.39■■□□□ 1.49
CMTM3-201ENST00000361909 GLIPR1L2Q4G1C9 344 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms