RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RPGRIP1LQ68CZ1 1315 aa21.01■□□□□ 0.95
VPS29-201ENST00000360579 KIF1BO60333 1816 aa21■□□□□ 0.95
VPS29-201ENST00000360579 NPHP3Q7Z494 1330 aa20.97■□□□□ 0.95
VPS29-201ENST00000360579 ATRNO75882 1429 aa20.96■□□□□ 0.95
VPS29-201ENST00000360579 COL22A1Q8NFW1 1626 aaPredicted RBP20.95■□□□□ 0.94
VPS29-201ENST00000360579 CCDC125Q86Z20 511 aa20.94■□□□□ 0.94
VPS29-201ENST00000360579 ZRANB1Q9UGI0 708 aa20.94■□□□□ 0.94
VPS29-201ENST00000360579 NAIPQ13075 1403 aa20.94■□□□□ 0.94
VPS29-201ENST00000360579 ESCO1Q5FWF5 840 aa20.93■□□□□ 0.94
VPS29-201ENST00000360579 MYOM2P54296 1465 aa20.93■□□□□ 0.94
VPS29-201ENST00000360579 LRPPRCP42704 1394 aaKnown RBP20.92■□□□□ 0.94
VPS29-201ENST00000360579 CDC42BPGQ6DT37 1551 aa20.91■□□□□ 0.94
VPS29-201ENST00000360579 PPARGC1BQ86YN6 1023 aaKnown RBP20.91■□□□□ 0.94
VPS29-201ENST00000360579 EP400Q96L91 3159 aa20.91■□□□□ 0.94
VPS29-201ENST00000360579 MAPK8IP2Q13387 824 aaPredicted RBP20.89■□□□□ 0.93
VPS29-201ENST00000360579 BCL9LQ86UU0 1499 aa20.88■□□□□ 0.93
VPS29-201ENST00000360579 PXDNQ92626 1479 aa20.88■□□□□ 0.93
VPS29-201ENST00000360579 RRBP1Q9P2E9 1410 aaKnown RBP20.88■□□□□ 0.93
VPS29-201ENST00000360579 SLC4A1APQ9BWU0 796 aaKnown RBP20.88■□□□□ 0.93
VPS29-201ENST00000360579 GJD4Q96KN9 370 aaPredicted RBP20.87■□□□□ 0.93
VPS29-201ENST00000360579 FOXO3O43524 673 aa20.86■□□□□ 0.93
VPS29-201ENST00000360579 PPLO60437 1756 aa20.85■□□□□ 0.93
VPS29-201ENST00000360579 TECPR2O15040 1411 aa20.83■□□□□ 0.93
VPS29-201ENST00000360579 XPCQ01831 940 aaPredicted RBP20.82■□□□□ 0.92
VPS29-201ENST00000360579 UNC5CLQ8IV45 518 aa20.81■□□□□ 0.92
VPS29-201ENST00000360579 MARF1Q9Y4F3 1742 aaKnown RBP20.81■□□□□ 0.92
VPS29-201ENST00000360579 ABCC11Q96J66 1382 aa20.8■□□□□ 0.92
VPS29-201ENST00000360579 ADGRF5Q8IZF2 1346 aa20.79■□□□□ 0.92
VPS29-201ENST00000360579 WAPLQ7Z5K2 1190 aa20.79■□□□□ 0.92
VPS29-201ENST00000360579 STK26Q9P289 416 aa20.79■□□□□ 0.92
VPS29-201ENST00000360579 ANKRD30BQ9BXX2 1392 aa20.79■□□□□ 0.92
VPS29-201ENST00000360579 SPATA31A3Q5VYP0 1347 aa20.78■□□□□ 0.92
VPS29-201ENST00000360579 CCDC144AA2RUR9 1427 aa20.78■□□□□ 0.92
VPS29-201ENST00000360579 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.78■□□□□ 0.92
VPS29-201ENST00000360579 NUTM2FA1L443 756 aa20.78■□□□□ 0.92
VPS29-201ENST00000360579 SLIT2O94813 1529 aa20.78■□□□□ 0.92
VPS29-201ENST00000360579 BLMP54132 1417 aaPredicted RBP20.78■□□□□ 0.92
VPS29-201ENST00000360579 RALGAPBQ86X10 1494 aa20.77■□□□□ 0.92
VPS29-201ENST00000360579 KIF1AQ12756 1690 aa20.75■□□□□ 0.91
VPS29-201ENST00000360579 RGL3Q3MIN7 710 aa20.74■□□□□ 0.91
VPS29-201ENST00000360579 SPATA31E1Q6ZUB1 1445 aa20.73■□□□□ 0.91
VPS29-201ENST00000360579 HAP1P54257 671 aaPredicted RBP20.73■□□□□ 0.91
VPS29-201ENST00000360579 SF3B2Q13435 895 aaKnown RBP20.73■□□□□ 0.91
VPS29-201ENST00000360579 KRT28Q7Z3Y7 464 aa20.73■□□□□ 0.91
VPS29-201ENST00000360579 KNDC1Q76NI1 1749 aa20.73■□□□□ 0.91
VPS29-201ENST00000360579 PLEKHH1Q9ULM0 1364 aa20.72■□□□□ 0.91
VPS29-201ENST00000360579 GLI3P10071 1580 aa20.72■□□□□ 0.91
VPS29-201ENST00000360579 PSME1Q06323 249 aa20.72■□□□□ 0.91
VPS29-201ENST00000360579 TMEM132EQ6IEE7 984 aa20.72■□□□□ 0.91
VPS29-201ENST00000360579 SIRT1Q96EB6 747 aa20.72■□□□□ 0.91
VPS29-201ENST00000360579 USP32Q8NFA0 1604 aa20.71■□□□□ 0.91
VPS29-201ENST00000360579 PIK3C2GO75747 1445 aa20.71■□□□□ 0.91
VPS29-201ENST00000360579 YTHDC2Q9H6S0 1430 aaKnown RBP20.71■□□□□ 0.91
VPS29-201ENST00000360579 FMN2Q9NZ56 1722 aa20.71■□□□□ 0.91
VPS29-201ENST00000360579 VPS72Q15906 364 aa20.7■□□□□ 0.9
VPS29-201ENST00000360579 TNS3Q68CZ2 1445 aa20.7■□□□□ 0.9
VPS29-201ENST00000360579 PPP4R3CPQ6ZMV5 832 aa20.69■□□□□ 0.9
VPS29-201ENST00000360579 SEPT12Q8IYM1 358 aa20.69■□□□□ 0.9
VPS29-201ENST00000360579 PHF8Q9UPP1 1060 aa20.69■□□□□ 0.9
VPS29-201ENST00000360579 SBNO1A3KN83 1393 aa20.67■□□□□ 0.9
VPS29-201ENST00000360579 IFT172Q9UG01 1749 aa20.67■□□□□ 0.9
VPS29-201ENST00000360579 ONECUT3O60422 494 aaPredicted RBP20.66■□□□□ 0.9
VPS29-201ENST00000360579 DEFB132Q7Z7B7 95 aa20.66■□□□□ 0.9
VPS29-201ENST00000360579 CCDC9Q9Y3X0 531 aaKnown RBP20.66■□□□□ 0.9
VPS29-201ENST00000360579 ARHGEF10O15013 1369 aa20.66■□□□□ 0.9
VPS29-201ENST00000360579 MPHOSPH9Q99550 1183 aa20.65■□□□□ 0.9
VPS29-201ENST00000360579 KRT27Q7Z3Y8 459 aa20.64■□□□□ 0.89
VPS29-201ENST00000360579 C14orf93Q9H972 538 aaKnown RBP20.64■□□□□ 0.89
VPS29-201ENST00000360579 DHX57Q6P158 1386 aaKnown RBP20.63■□□□□ 0.89
VPS29-201ENST00000360579 CABLES1Q8TDN4 633 aa20.63■□□□□ 0.89
VPS29-201ENST00000360579 NWD2Q9ULI1 1742 aa20.63■□□□□ 0.89
VPS29-201ENST00000360579 NRXN1Q9ULB1 1477 aa20.62■□□□□ 0.89
VPS29-201ENST00000360579 LMOD2Q6P5Q4 547 aa20.62■□□□□ 0.89
VPS29-201ENST00000360579 BRWD3Q6RI45 1802 aa20.6■□□□□ 0.89
VPS29-201ENST00000360579 ACIN1Q9UKV3 1341 aaKnown RBP20.6■□□□□ 0.89
VPS29-201ENST00000360579 PLCH1Q4KWH8 1693 aa20.59■□□□□ 0.89
VPS29-201ENST00000360579 BAG6P46379 1132 aa20.59■□□□□ 0.89
VPS29-201ENST00000360579 ANKARQ7Z5J8 1434 aa20.59■□□□□ 0.89
VPS29-201ENST00000360579 A0A0G2JS52 829 aa20.58■□□□□ 0.89
VPS29-201ENST00000360579 PLEKHG5O94827 1062 aa20.58■□□□□ 0.89
VPS29-201ENST00000360579 MYT1Q01538 1121 aa20.58■□□□□ 0.89
VPS29-201ENST00000360579 PRAM1Q96QH2 718 aa20.58■□□□□ 0.89
VPS29-201ENST00000360579 FAM83GA6ND36 823 aa20.57■□□□□ 0.88
VPS29-201ENST00000360579 CFAP70Q5T0N1 1121 aa20.57■□□□□ 0.88
VPS29-201ENST00000360579 LRP5O75197 1615 aa20.56■□□□□ 0.88
VPS29-201ENST00000360579 POGKQ9P215 609 aa20.56■□□□□ 0.88
VPS29-201ENST00000360579 SAFB2Q14151 953 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS29-201ENST00000360579 ABCA3Q99758 1704 aa20.55■□□□□ 0.88
VPS29-201ENST00000360579 RGPD8O14715 1765 aaPredicted RBP20.54■□□□□ 0.88
VPS29-201ENST00000360579 DLC1Q96QB1 1528 aa20.54■□□□□ 0.88
VPS29-201ENST00000360579 PMFBP1Q8TBY8 1022 aa20.54■□□□□ 0.88
VPS29-201ENST00000360579 FAM98CQ17RN3 349 aaKnown RBP20.53■□□□□ 0.88
VPS29-201ENST00000360579 BTG4Q9NY30 223 aa20.53■□□□□ 0.88
VPS29-201ENST00000360579 EIF3AQ14152 1382 aaKnown RBP20.53■□□□□ 0.88
VPS29-201ENST00000360579 GPRASP1Q5JY77 1395 aa20.53■□□□□ 0.88
VPS29-201ENST00000360579 ADGRB2O60241 1585 aa20.51■□□□□ 0.87
VPS29-201ENST00000360579 PSDA5PKW4 1024 aaPredicted RBP20.49■□□□□ 0.87
VPS29-201ENST00000360579 HRCP23327 699 aa20.49■□□□□ 0.87
VPS29-201ENST00000360579 NRAPQ86VF7 1730 aa20.49■□□□□ 0.87
VPS29-201ENST00000360579 COL14A1Q05707 1796 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms