RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MYOM1P52179 1685 aa15.52■□□□□ 0.08
CLIP3-201ENST00000360535 GGNBP2Q9H3C7 697 aa15.52■□□□□ 0.07
CLIP3-201ENST00000360535 UPF2Q9HAU5 1272 aaKnown RBP15.52■□□□□ 0.07
CLIP3-201ENST00000360535 NPC1L1Q9UHC9 1359 aa15.51■□□□□ 0.07
CLIP3-201ENST00000360535 SLC24A1O60721 1099 aa15.51■□□□□ 0.07
CLIP3-201ENST00000360535 SRPK2P78362 688 aaKnown RBP15.51■□□□□ 0.07
CLIP3-201ENST00000360535 CEP152O94986 1710 aa15.51■□□□□ 0.07
CLIP3-201ENST00000360535 BECN1Q14457 450 aa15.51■□□□□ 0.07
CLIP3-201ENST00000360535 USP19O94966 1318 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 MAPK8IP3Q9UPT6 1336 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 ATP7AQ04656 1500 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 PMFBP1Q8TBY8 1022 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 SMC4Q9NTJ3 1288 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 POGKQ9P215 609 aa15.5■□□□□ 0.07
CLIP3-201ENST00000360535 RTEL1-TNFRSF6BF6WH68 1400 aa15.49■□□□□ 0.07
CLIP3-201ENST00000360535 MFAP1P55081 439 aaKnown RBP15.49■□□□□ 0.07
CLIP3-201ENST00000360535 ITPRIPQ8IWB1 547 aa15.49■□□□□ 0.07
CLIP3-201ENST00000360535 POLR3AO14802 1390 aaPredicted RBP15.48■□□□□ 0.07
CLIP3-201ENST00000360535 ABCA6Q8N139 1617 aa15.48■□□□□ 0.07
CLIP3-201ENST00000360535 EXOSC9Q06265 439 aaKnown RBP15.47■□□□□ 0.07
CLIP3-201ENST00000360535 RWDD1Q9H446 243 aaPredicted RBP15.47■□□□□ 0.07
CLIP3-201ENST00000360535 SHROOM2Q13796 1616 aa15.47■□□□□ 0.07
CLIP3-201ENST00000360535 NPM1P06748 294 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLIP3-201ENST00000360535 GZF1Q9H116 711 aaPredicted RBP15.47■□□□□ 0.07
CLIP3-201ENST00000360535 MYH16Q9H6N6 1097 aa15.47■□□□□ 0.07
CLIP3-201ENST00000360535 EIF5BO60841 1220 aaKnown RBP15.46■□□□□ 0.07
CLIP3-201ENST00000360535 TET3O43151 1660 aa15.46■□□□□ 0.07
CLIP3-201ENST00000360535 FBLN1P23142 703 aa15.46■□□□□ 0.07
CLIP3-201ENST00000360535 C14orf93Q9H972 538 aaKnown RBP15.46■□□□□ 0.07
CLIP3-201ENST00000360535 MINK1Q8N4C8 1332 aaPredicted RBP15.46■□□□□ 0.06
CLIP3-201ENST00000360535 MAP3K4Q9Y6R4 1608 aa15.45■□□□□ 0.06
CLIP3-201ENST00000360535 ZKSCAN2Q63HK3 967 aa15.45■□□□□ 0.06
CLIP3-201ENST00000360535 DZIP1LQ8IYY4 767 aaKnown RBP15.45■□□□□ 0.06
CLIP3-201ENST00000360535 NGEFQ8N5V2 710 aa15.45■□□□□ 0.06
CLIP3-201ENST00000360535 CLASP1Q7Z460 1538 aa15.44■□□□□ 0.06
CLIP3-201ENST00000360535 RAPGEF3O95398 923 aa15.44■□□□□ 0.06
CLIP3-201ENST00000360535 WDR63Q8IWG1 891 aa15.44■□□□□ 0.06
CLIP3-201ENST00000360535 EVC2Q86UK5 1308 aa15.44■□□□□ 0.06
CLIP3-201ENST00000360535 KIF1BO60333 1816 aa15.43■□□□□ 0.06
CLIP3-201ENST00000360535 MVPQ14764 893 aaKnown RBP15.42■□□□□ 0.06
CLIP3-201ENST00000360535 TBC1D2Q9BYX2 928 aa15.42■□□□□ 0.06
CLIP3-201ENST00000360535 SSH1Q8WYL5 1049 aa15.41■□□□□ 0.06
CLIP3-201ENST00000360535 ELL2O00472 640 aaPredicted RBP15.41■□□□□ 0.06
CLIP3-201ENST00000360535 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.41■□□□□ 0.06
CLIP3-201ENST00000360535 NOB1Q9ULX3 412 aaKnown RBP15.41■□□□□ 0.06
CLIP3-201ENST00000360535 RIPK4P57078 832 aa15.4■□□□□ 0.06
CLIP3-201ENST00000360535 MROH2AA6NES4 1674 aa15.4■□□□□ 0.06
CLIP3-201ENST00000360535 TRIM27P14373 513 aa15.4■□□□□ 0.06
CLIP3-201ENST00000360535 TMPOP42166 694 aaKnown RBP15.39■□□□□ 0.05
CLIP3-201ENST00000360535 ASXL2Q76L83 1435 aa15.39■□□□□ 0.05
CLIP3-201ENST00000360535 TBC1D32Q96NH3 1257 aa15.38■□□□□ 0.05
CLIP3-201ENST00000360535 MYOM2P54296 1465 aa15.38■□□□□ 0.05
CLIP3-201ENST00000360535 VGFO15240 615 aaPredicted RBP15.38■□□□□ 0.05
CLIP3-201ENST00000360535 NPATQ14207 1427 aa15.38■□□□□ 0.05
CLIP3-201ENST00000360535 LNPKQ9C0E8 428 aa15.38■□□□□ 0.05
CLIP3-201ENST00000360535 NINLQ9Y2I6 1382 aa15.37■□□□□ 0.05
CLIP3-201ENST00000360535 UHRF1BP1LA0JNW5 1464 aa15.37■□□□□ 0.05
CLIP3-201ENST00000360535 TMEM57Q8N5G2 664 aa15.37■□□□□ 0.05
CLIP3-201ENST00000360535 THUMPD2Q9BTF0 503 aaKnown RBP15.37■□□□□ 0.05
CLIP3-201ENST00000360535 C22orf23Q9BZE7 217 aa15.37■□□□□ 0.05
CLIP3-201ENST00000360535 IDI1Q13907 227 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 STAG3Q9UJ98 1225 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 DEPDC5O75140 1603 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 PRAM1Q96QH2 718 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 C1orf115Q9H7X2 142 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 PPRC1Q5VV67 1664 aaKnown RBP15.36■□□□□ 0.05
CLIP3-201ENST00000360535 HMOX1P09601 288 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 FOXD4L1Q9NU39 408 aa15.36■□□□□ 0.05
CLIP3-201ENST00000360535 EFCAB6Q5THR3 1501 aa15.35■□□□□ 0.05
CLIP3-201ENST00000360535 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
CLIP3-201ENST00000360535 TRIM35Q9UPQ4 493 aa15.35■□□□□ 0.05
CLIP3-201ENST00000360535 INO80Q9ULG1 1556 aaPredicted RBP15.34■□□□□ 0.05
CLIP3-201ENST00000360535 ATF7IPQ6VMQ6 1270 aa15.34■□□□□ 0.05
CLIP3-201ENST00000360535 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
CLIP3-201ENST00000360535 MROH1Q8NDA8 1641 aa15.34■□□□□ 0.05
CLIP3-201ENST00000360535 SBNO2Q9Y2G9 1366 aa15.34■□□□□ 0.05
CLIP3-201ENST00000360535 KIAA1210Q9ULL0 1709 aa15.34■□□□□ 0.05
CLIP3-201ENST00000360535 QRICH2Q9H0J4 1663 aa15.33■□□□□ 0.04
CLIP3-201ENST00000360535 A0A1W2PP64 1363 aa15.33■□□□□ 0.04
CLIP3-201ENST00000360535 FYB1O15117 783 aa15.33■□□□□ 0.04
CLIP3-201ENST00000360535 DIAPH1O60610 1272 aaKnown RBP15.33■□□□□ 0.04
CLIP3-201ENST00000360535 CCDC27Q2M243 656 aa15.33■□□□□ 0.04
CLIP3-201ENST00000360535 DDX19BQ9UMR2 479 aa15.33■□□□□ 0.04
CLIP3-201ENST00000360535 VWDEQ8N2E2 1590 aa15.32■□□□□ 0.04
CLIP3-201ENST00000360535 CABP1Q9NZU7 370 aa15.32■□□□□ 0.04
CLIP3-201ENST00000360535 SHPRHQ149N8 1683 aa15.32■□□□□ 0.04
CLIP3-201ENST00000360535 ANKRD36BQ8N2N9 1353 aa15.32■□□□□ 0.04
CLIP3-201ENST00000360535 ANTXR1Q9H6X2 564 aa15.31■□□□□ 0.04
CLIP3-201ENST00000360535 TERF2IPQ9NYB0 399 aa15.31■□□□□ 0.04
CLIP3-201ENST00000360535 PRKAR2BP31323 418 aa15.3■□□□□ 0.04
CLIP3-201ENST00000360535 ANKRD45Q5TZF3 282 aa15.3■□□□□ 0.04
CLIP3-201ENST00000360535 KIDINS220Q9ULH0 1771 aa15.3■□□□□ 0.04
CLIP3-201ENST00000360535 CD109Q6YHK3 1445 aa15.3■□□□□ 0.04
CLIP3-201ENST00000360535 IQSEC2Q5JU85 1478 aa15.29■□□□□ 0.04
CLIP3-201ENST00000360535 FBXO31Q5XUX0 539 aaPredicted RBP15.29■□□□□ 0.04
CLIP3-201ENST00000360535 HSCBQ8IWL3 235 aa15.29■□□□□ 0.04
CLIP3-201ENST00000360535 PLEKHF1Q96S99 279 aa15.29■□□□□ 0.04
CLIP3-201ENST00000360535 HSP90AA1P07900 732 aaKnown RBP15.29■□□□□ 0.04
CLIP3-201ENST00000360535 ABCA9Q8IUA7 1624 aa15.29■□□□□ 0.04
CLIP3-201ENST00000360535 HDGFL2Q7Z4V5 671 aaPredicted RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms