RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PIK3R4Q99570 1358 aa25.64■■□□□ 1.7
CLN3-206ENST00000360019 AMOTL2Q9Y2J4 779 aa25.64■■□□□ 1.7
CLN3-206ENST00000360019 LMTK3Q96Q04 1460 aa25.63■■□□□ 1.69
CLN3-206ENST00000360019 XRN1Q8IZH2 1706 aaKnown RBP25.62■■□□□ 1.69
CLN3-206ENST00000360019 PANK3Q9H999 370 aa25.62■■□□□ 1.69
CLN3-206ENST00000360019 PUS7Q96PZ0 661 aaKnown RBP25.61■■□□□ 1.69
CLN3-206ENST00000360019 PTCH1Q13635 1447 aa25.61■■□□□ 1.69
CLN3-206ENST00000360019 HSPA2P54652 639 aa25.6■■□□□ 1.69
CLN3-206ENST00000360019 CABP2Q9NPB3 220 aa25.6■■□□□ 1.69
CLN3-206ENST00000360019 PER1O15534 1290 aaPredicted RBP25.59■■□□□ 1.69
CLN3-206ENST00000360019 PRKRIP1Q9H875 184 aaPredicted RBP25.56■■□□□ 1.68
CLN3-206ENST00000360019 CHD2O14647 1828 aaKnown RBP25.56■■□□□ 1.68
CLN3-206ENST00000360019 KCNA6P17658 529 aa25.56■■□□□ 1.68
CLN3-206ENST00000360019 SRPK2P78362 688 aaKnown RBP25.56■■□□□ 1.68
CLN3-206ENST00000360019 CDK19Q9BWU1 502 aa25.56■■□□□ 1.68
CLN3-206ENST00000360019 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.55■■□□□ 1.68
CLN3-206ENST00000360019 SLC12A5Q9H2X9 1139 aa25.53■■□□□ 1.68
CLN3-206ENST00000360019 ADGRB2O60241 1585 aa25.52■■□□□ 1.68
CLN3-206ENST00000360019 ATAD2Q6PL18 1390 aa25.52■■□□□ 1.68
CLN3-206ENST00000360019 WASLO00401 505 aaPredicted RBP25.51■■□□□ 1.67
CLN3-206ENST00000360019 TMC1Q8TDI8 760 aa25.51■■□□□ 1.67
CLN3-206ENST00000360019 CCER2I3L3R5 266 aa25.49■■□□□ 1.67
CLN3-206ENST00000360019 CNGB1Q14028 1251 aaPredicted RBP25.49■■□□□ 1.67
CLN3-206ENST00000360019 NINLQ9Y2I6 1382 aa25.47■■□□□ 1.67
CLN3-206ENST00000360019 CARD14Q9BXL6 1004 aa25.47■■□□□ 1.67
CLN3-206ENST00000360019 NWD1Q149M9 1564 aa25.46■■□□□ 1.67
CLN3-206ENST00000360019 STRCQ7RTU9 1775 aa25.45■■□□□ 1.67
CLN3-206ENST00000360019 KNSTRNQ9Y448 316 aa25.45■■□□□ 1.66
CLN3-206ENST00000360019 ANKRD36BQ8N2N9 1353 aa25.43■■□□□ 1.66
CLN3-206ENST00000360019 AMER1Q5JTC6 1135 aaPredicted RBP25.43■■□□□ 1.66
CLN3-206ENST00000360019 KTN1Q86UP2 1357 aaKnown RBP25.43■■□□□ 1.66
CLN3-206ENST00000360019 CD163L1Q9NR16 1453 aa25.42■■□□□ 1.66
CLN3-206ENST00000360019 CC2D1BQ5T0F9 858 aaKnown RBP25.42■■□□□ 1.66
CLN3-206ENST00000360019 PARD3Q8TEW0 1356 aa25.41■■□□□ 1.66
CLN3-206ENST00000360019 ATP7BP35670 1465 aa25.41■■□□□ 1.66
CLN3-206ENST00000360019 NSD3Q9BZ95 1437 aa25.4■■□□□ 1.66
CLN3-206ENST00000360019 CABP1Q9NZU7 370 aa25.4■■□□□ 1.66
CLN3-206ENST00000360019 A0A1W2PP64 1363 aa25.4■■□□□ 1.66
CLN3-206ENST00000360019 PRR36Q9H6K5 1346 aa25.4■■□□□ 1.66
CLN3-206ENST00000360019 RALBP1Q15311 655 aa25.4■■□□□ 1.66
CLN3-206ENST00000360019 NUDT16Q96DE0 195 aaKnown RBP25.4■■□□□ 1.66
CLN3-206ENST00000360019 NPC1L1Q9UHC9 1359 aa25.38■■□□□ 1.65
CLN3-206ENST00000360019 NALCNQ8IZF0 1738 aa25.37■■□□□ 1.65
CLN3-206ENST00000360019 CCDC184Q52MB2 194 aa25.37■■□□□ 1.65
CLN3-206ENST00000360019 RBM33Q96EV2 1170 aaKnown RBP25.37■■□□□ 1.65
CLN3-206ENST00000360019 PPIP5K1Q6PFW1 1433 aa25.37■■□□□ 1.65
CLN3-206ENST00000360019 CCDC61Q9Y6R9 512 aa25.35■■□□□ 1.65
CLN3-206ENST00000360019 NKTRP30414 1462 aaKnown RBP25.35■■□□□ 1.65
CLN3-206ENST00000360019 TERF2IPQ9NYB0 399 aa25.35■■□□□ 1.65
CLN3-206ENST00000360019 USP32Q8NFA0 1604 aa25.34■■□□□ 1.65
CLN3-206ENST00000360019 STRCP1A6NGW2 1772 aa25.34■■□□□ 1.65
CLN3-206ENST00000360019 TOPAZ1Q8N9V7 1692 aa25.33■■□□□ 1.65
CLN3-206ENST00000360019 MYBBP1AQ9BQG0 1328 aaKnown RBP25.33■■□□□ 1.65
CLN3-206ENST00000360019 ADGRL3Q9HAR2 1447 aa25.33■■□□□ 1.65
CLN3-206ENST00000360019 NUTM2FA1L443 756 aa25.33■■□□□ 1.64
CLN3-206ENST00000360019 CDC42BPGQ6DT37 1551 aa25.32■■□□□ 1.64
CLN3-206ENST00000360019 HDGFL2Q7Z4V5 671 aaPredicted RBP25.3■■□□□ 1.64
CLN3-206ENST00000360019 CPSF1Q10570 1443 aaKnown RBP25.3■■□□□ 1.64
CLN3-206ENST00000360019 FMN2Q9NZ56 1722 aa25.3■■□□□ 1.64
CLN3-206ENST00000360019 PROSER2Q86WR7 435 aaPredicted RBP25.28■■□□□ 1.64
CLN3-206ENST00000360019 YTHDC1Q96MU7 727 aaKnown RBP25.28■■□□□ 1.64
CLN3-206ENST00000360019 MRS2Q9HD23 443 aa25.28■■□□□ 1.64
CLN3-206ENST00000360019 CGNL1Q0VF96 1302 aa25.28■■□□□ 1.64
CLN3-206ENST00000360019 ANKARQ7Z5J8 1434 aa25.27■■□□□ 1.64
CLN3-206ENST00000360019 PLEKHG3A1L390 1219 aa25.26■■□□□ 1.63
CLN3-206ENST00000360019 RGPD8O14715 1765 aaPredicted RBP25.25■■□□□ 1.63
CLN3-206ENST00000360019 NLRP13Q86W25 1043 aa25.24■■□□□ 1.63
CLN3-206ENST00000360019 ITSN1Q15811 1721 aa25.24■■□□□ 1.63
CLN3-206ENST00000360019 AKAP12Q02952 1782 aa25.24■■□□□ 1.63
CLN3-206ENST00000360019 C14orf37Q86TY3 774 aa25.23■■□□□ 1.63
CLN3-206ENST00000360019 BRD4O60885 1362 aaPredicted RBP25.23■■□□□ 1.63
CLN3-206ENST00000360019 MON2Q7Z3U7 1717 aa25.23■■□□□ 1.63
CLN3-206ENST00000360019 NSD2O96028 1365 aa25.23■■□□□ 1.63
CLN3-206ENST00000360019 TMEM94Q12767 1356 aa25.23■■□□□ 1.63
CLN3-206ENST00000360019 PPP2R1AP30153 589 aa25.21■■□□□ 1.63
CLN3-206ENST00000360019 ACEP12821 1306 aa25.21■■□□□ 1.63
CLN3-206ENST00000360019 EDC4Q6P2E9 1401 aaKnown RBP25.21■■□□□ 1.63
CLN3-206ENST00000360019 ZNF335Q9H4Z2 1342 aaPredicted RBP25.2■■□□□ 1.62
CLN3-206ENST00000360019 FYB1O15117 783 aa25.19■■□□□ 1.62
CLN3-206ENST00000360019 PMFBP1Q8TBY8 1022 aa25.19■■□□□ 1.62
CLN3-206ENST00000360019 ZNF692Q9BU19 519 aaPredicted RBP25.19■■□□□ 1.62
CLN3-206ENST00000360019 NCOA3Q9Y6Q9 1424 aa25.18■■□□□ 1.62
CLN3-206ENST00000360019 POLR3AO14802 1390 aaPredicted RBP25.17■■□□□ 1.62
CLN3-206ENST00000360019 MORC1Q86VD1 984 aa25.17■■□□□ 1.62
CLN3-206ENST00000360019 GGNBP2Q9H3C7 697 aa25.17■■□□□ 1.62
CLN3-206ENST00000360019 KIF20BQ96Q89 1820 aa25.17■■□□□ 1.62
CLN3-206ENST00000360019 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.16■■□□□ 1.62
CLN3-206ENST00000360019 C19orf44Q9H6X5 657 aa25.16■■□□□ 1.62
CLN3-206ENST00000360019 DMRT2Q9Y5R5 561 aa25.16■■□□□ 1.62
CLN3-206ENST00000360019 NRKQ7Z2Y5 1582 aa25.16■■□□□ 1.62
CLN3-206ENST00000360019 USP6P35125 1406 aa25.15■■□□□ 1.62
CLN3-206ENST00000360019 ANKRD26Q9UPS8 1709 aa25.15■■□□□ 1.62
CLN3-206ENST00000360019 LRRC7Q96NW7 1537 aa25.13■■□□□ 1.61
CLN3-206ENST00000360019 FAM9BQ8IZU0 186 aa25.13■■□□□ 1.61
CLN3-206ENST00000360019 PNISRQ8TF01 805 aaKnown RBP25.13■■□□□ 1.61
CLN3-206ENST00000360019 XIRP1Q702N8 1843 aaKnown RBP25.13■■□□□ 1.61
CLN3-206ENST00000360019 SSH2Q76I76 1423 aa25.12■■□□□ 1.61
CLN3-206ENST00000360019 DCCP43146 1447 aa25.12■■□□□ 1.61
CLN3-206ENST00000360019 NGDNQ8NEJ9 315 aaKnown RBP25.12■■□□□ 1.61
CLN3-206ENST00000360019 TNNT2P45379 298 aaPredicted RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms