RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 NOB1Q9ULX3 412 aaKnown RBP16.7■□□□□ 0.26
VCP-201ENST00000358901 DAPK1P53355 1430 aa16.7■□□□□ 0.26
VCP-201ENST00000358901 BICD2Q8TD16 824 aa16.7■□□□□ 0.26
VCP-201ENST00000358901 ARHGAP5Q13017 1502 aa16.7■□□□□ 0.26
VCP-201ENST00000358901 POLA1P09884 1462 aaPredicted RBP16.69■□□□□ 0.26
VCP-201ENST00000358901 G3BP1Q13283 466 aaKnown RBP eCLIP16.69■□□□□ 0.261e-7■■■■□ 20.9
VCP-201ENST00000358901 TWISTNBQ3B726 338 aaPredicted RBP16.69■□□□□ 0.26
VCP-201ENST00000358901 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.68■□□□□ 0.26
VCP-201ENST00000358901 NEK4P51957 841 aa16.68■□□□□ 0.26
VCP-201ENST00000358901 ZNF592Q92610 1267 aa16.68■□□□□ 0.26
VCP-201ENST00000358901 ERBINQ96RT1 1412 aa16.68■□□□□ 0.26
VCP-201ENST00000358901 RNF20Q5VTR2 975 aa16.68■□□□□ 0.26
VCP-201ENST00000358901 CAVIN1Q6NZI2 390 aaKnown RBP16.68■□□□□ 0.26
VCP-201ENST00000358901 ATF7IPQ6VMQ6 1270 aa16.67■□□□□ 0.26
VCP-201ENST00000358901 UBTFL1P0CB47 393 aaPredicted RBP16.67■□□□□ 0.26
VCP-201ENST00000358901 TTC5Q8N0Z6 440 aa16.67■□□□□ 0.26
VCP-201ENST00000358901 PRAM1Q96QH2 718 aa16.67■□□□□ 0.26
VCP-201ENST00000358901 SYNJ2O15056 1496 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 DDX58O95786 925 aaKnown RBP16.66■□□□□ 0.26
VCP-201ENST00000358901 C20orf194Q5TEA3 1177 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 ANKRD30BQ9BXX2 1392 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 CLSTN1O94985 981 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 NUTM2GQ5VZR2 741 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 WDR63Q8IWG1 891 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 TOPBP1Q92547 1522 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 SLFN5Q08AF3 891 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 HSP90AB4PQ58FF6 505 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.66■□□□□ 0.26
VCP-201ENST00000358901 CHMP4CQ96CF2 233 aa16.66■□□□□ 0.26
VCP-201ENST00000358901 MVPQ14764 893 aaKnown RBP16.66■□□□□ 0.26
VCP-201ENST00000358901 CPLX2Q6PUV4 134 aaKnown RBP16.66■□□□□ 0.26
VCP-201ENST00000358901 GTF2E1P29083 439 aaPredicted RBP16.65■□□□□ 0.26
VCP-201ENST00000358901 OSCARQ8IYS5 282 aa16.65■□□□□ 0.26
VCP-201ENST00000358901 GCC1Q96CN9 775 aa16.65■□□□□ 0.26
VCP-201ENST00000358901 SURF6O75683 361 aaKnown RBP16.64■□□□□ 0.25
VCP-201ENST00000358901 CPLX1O14810 134 aa16.64■□□□□ 0.25
VCP-201ENST00000358901 ERC2O15083 957 aa16.64■□□□□ 0.25
VCP-201ENST00000358901 NLRP6P59044 892 aa16.64■□□□□ 0.25
VCP-201ENST00000358901 PSME1Q06323 249 aa16.64■□□□□ 0.25
VCP-201ENST00000358901 WWC1Q8IX03 1113 aa16.64■□□□□ 0.25
VCP-201ENST00000358901 PES1O00541 588 aaKnown RBP16.63■□□□□ 0.25
VCP-201ENST00000358901 GNAI3P08754 354 aa16.63■□□□□ 0.25
VCP-201ENST00000358901 CCAR2Q8N163 923 aaKnown RBP16.63■□□□□ 0.25
VCP-201ENST00000358901 PRPF40AO75400 957 aaKnown RBP16.63■□□□□ 0.25
VCP-201ENST00000358901 TPM3P06753 285 aa16.63■□□□□ 0.25
VCP-201ENST00000358901 RABEP1Q15276 862 aa16.63■□□□□ 0.25
VCP-201ENST00000358901 AIMP1Q12904 312 aaKnown RBP16.63■□□□□ 0.25
VCP-201ENST00000358901 CABP1Q9NZU7 370 aa16.62■□□□□ 0.25
VCP-201ENST00000358901 SCAPERQ9BY12 1400 aa16.62■□□□□ 0.25
VCP-201ENST00000358901 TNNT3P45378 269 aaPredicted RBP16.62■□□□□ 0.25
VCP-201ENST00000358901 R3HCC1Q9Y3T6 440 aaKnown RBP16.62■□□□□ 0.25
VCP-201ENST00000358901 LRRFIP1Q32MZ4 808 aaKnown RBP16.61■□□□□ 0.25
VCP-201ENST00000358901 APPP05067 770 aa16.61■□□□□ 0.25
VCP-201ENST00000358901 CLASRPQ8N2M8 674 aaKnown RBP16.61■□□□□ 0.25
VCP-201ENST00000358901 CDK13Q14004 1512 aaKnown RBP16.61■□□□□ 0.25
VCP-201ENST00000358901 FOSBP53539 338 aa16.61■□□□□ 0.25
VCP-201ENST00000358901 AKAP17AQ02040 695 aaKnown RBP16.6■□□□□ 0.25
VCP-201ENST00000358901 EPRSP07814 1512 aaKnown RBP16.6■□□□□ 0.25
VCP-201ENST00000358901 CT47B1P0C2W7 299 aaPredicted RBP16.6■□□□□ 0.25
VCP-201ENST00000358901 FAM69CQ0P6D2 419 aa16.6■□□□□ 0.25
VCP-201ENST00000358901 TPD52L1Q16890 204 aaPredicted RBP16.6■□□□□ 0.25
VCP-201ENST00000358901 SULT6B1Q6IMI4 303 aa16.6■□□□□ 0.25
VCP-201ENST00000358901 SASS6Q6UVJ0 657 aa16.6■□□□□ 0.25
VCP-201ENST00000358901 SLC4A2P04920 1241 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 SYNE3Q6ZMZ3 975 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 FBXW7Q969H0 707 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 MBD3O95983 291 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 GOLGA6L1Q8N7Z2 621 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 MCM4P33991 863 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 CCDC27Q2M243 656 aa16.59■□□□□ 0.25
VCP-201ENST00000358901 ANO8Q9HCE9 1232 aaPredicted RBP16.59■□□□□ 0.25
VCP-201ENST00000358901 NOC3LQ8WTT2 800 aaKnown RBP16.59■□□□□ 0.25
VCP-201ENST00000358901 CHD1LQ86WJ1 897 aa16.58■□□□□ 0.25
VCP-201ENST00000358901 NINLQ9Y2I6 1382 aa16.58■□□□□ 0.24
VCP-201ENST00000358901 RIC3Q7Z5B4 369 aa16.58■□□□□ 0.24
VCP-201ENST00000358901 CCDC30Q5VVM6 783 aa16.58■□□□□ 0.24
VCP-201ENST00000358901 NEUROD6Q96NK8 337 aa16.58■□□□□ 0.24
VCP-201ENST00000358901 TRDNQ13061 729 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 CCDC73Q6ZRK6 1079 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 CDK19Q9BWU1 502 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 IFT57Q9NWB7 429 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 TRIM29Q14134 588 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 TXNDC2Q86VQ3 553 aa16.57■□□□□ 0.24
VCP-201ENST00000358901 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.57■□□□□ 0.24
VCP-201ENST00000358901 CNTROBQ8N137 903 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 SUPT6HQ7KZ85 1726 aaKnown RBP16.56■□□□□ 0.24
VCP-201ENST00000358901 NCOA1Q15788 1441 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 HOMER1Q86YM7 354 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 K7ELQ4 463 aaPredicted RBP16.56■□□□□ 0.24
VCP-201ENST00000358901 GNAI2P04899 355 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 MCM2P49736 904 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 RAPGEF4Q8WZA2 1011 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 GAS2L2Q8NHY3 880 aa16.56■□□□□ 0.24
VCP-201ENST00000358901 PCF11O94913 1555 aaKnown RBP16.55■□□□□ 0.24
VCP-201ENST00000358901 FIBPO43427 364 aa16.55■□□□□ 0.24
VCP-201ENST00000358901 TMEM57Q8N5G2 664 aa16.55■□□□□ 0.24
VCP-201ENST00000358901 FSD1Q9BTV5 496 aa16.55■□□□□ 0.24
VCP-201ENST00000358901 TMPOP42166 694 aaKnown RBP16.54■□□□□ 0.24
VCP-201ENST00000358901 CCDC39Q9UFE4 941 aa16.54■□□□□ 0.24
VCP-201ENST00000358901 HECW1Q76N89 1606 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms