RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 ZNF335Q9H4Z2 1342 aaPredicted RBP8.32□□□□□ -1.08
CD47-201ENST00000355354 RRBP1Q9P2E9 1410 aaKnown RBP8.32□□□□□ -1.08
CD47-201ENST00000355354 CCNB3Q8WWL7 1395 aa8.32□□□□□ -1.08
CD47-201ENST00000355354 PEAK1Q9H792 1746 aa8.32□□□□□ -1.08
CD47-201ENST00000355354 CDK12Q9NYV4 1490 aaPredicted RBP8.31□□□□□ -1.08
CD47-201ENST00000355354 THSD7AQ9UPZ6 1657 aa8.31□□□□□ -1.08
CD47-201ENST00000355354 QRICH2Q9H0J4 1663 aa8.31□□□□□ -1.08
CD47-201ENST00000355354 SALL2Q9Y467 1007 aaPredicted RBP8.31□□□□□ -1.08
CD47-201ENST00000355354 ZFHX4Q86UP3 3567 aa8.31□□□□□ -1.08
CD47-201ENST00000355354 B4GALNT3Q6L9W6 998 aa8.31□□□□□ -1.08
CD47-201ENST00000355354 DCCP43146 1447 aa8.31□□□□□ -1.08
CD47-201ENST00000355354 HNRNPMP52272 730 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD47-201ENST00000355354 SBF2Q86WG5 1849 aa8.3□□□□□ -1.08
CD47-201ENST00000355354 FAM50AQ14320 339 aaKnown RBP8.3□□□□□ -1.08
CD47-201ENST00000355354 NRKQ7Z2Y5 1582 aa8.3□□□□□ -1.08
CD47-201ENST00000355354 PHRF1Q9P1Y6 1649 aaKnown RBP8.3□□□□□ -1.08
CD47-201ENST00000355354 TMEM2Q9UHN6 1383 aa8.29□□□□□ -1.08
CD47-201ENST00000355354 RBM19Q9Y4C8 960 aaKnown RBP8.29□□□□□ -1.08
CD47-201ENST00000355354 SPAG9O60271 1321 aaKnown RBP8.29□□□□□ -1.08
CD47-201ENST00000355354 ADGRB1O14514 1584 aa8.29□□□□□ -1.08
CD47-201ENST00000355354 MST1RQ04912 1400 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 TECPR2O15040 1411 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 ATMQ13315 3056 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 PLEKHG1Q9ULL1 1385 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 RSPH4AQ5TD94 716 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 LMO7Q8WWI1 1683 aa8.28□□□□□ -1.08
CD47-201ENST00000355354 COL18A1P39060 1754 aa8.27□□□□□ -1.09
CD47-201ENST00000355354 NCKAP5LQ9HCH0 1330 aa8.27□□□□□ -1.09
CD47-201ENST00000355354 QSER1Q2KHR3 1735 aa8.27□□□□□ -1.09
CD47-201ENST00000355354 DMRT2Q9Y5R5 561 aa8.26□□□□□ -1.09
CD47-201ENST00000355354 PXDNQ92626 1479 aa8.26□□□□□ -1.09
CD47-201ENST00000355354 SOCS7O14512 581 aa8.26□□□□□ -1.09
CD47-201ENST00000355354 MTUS2Q5JR59 1369 aa8.25□□□□□ -1.09
CD47-201ENST00000355354 PTCH1Q13635 1447 aa8.25□□□□□ -1.09
CD47-201ENST00000355354 AKAP12Q02952 1782 aa8.25□□□□□ -1.09
CD47-201ENST00000355354 GLI3P10071 1580 aa8.25□□□□□ -1.09
CD47-201ENST00000355354 LTKP29376 864 aa8.24□□□□□ -1.09
CD47-201ENST00000355354 FBXO31Q5XUX0 539 aaPredicted RBP8.24□□□□□ -1.09
CD47-201ENST00000355354 SHANK3Q9BYB0 1731 aa8.24□□□□□ -1.09
CD47-201ENST00000355354 SETD5Q9C0A6 1442 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 CDK11AQ9UQ88 783 aaPredicted RBP8.23□□□□□ -1.09
CD47-201ENST00000355354 NUP188Q5SRE5 1749 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 PIK3R4Q99570 1358 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 KIF15Q9NS87 1388 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 SPATA31E1Q6ZUB1 1445 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 CDCA7LQ96GN5 454 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 CASZ1Q86V15 1759 aa8.23□□□□□ -1.09
CD47-201ENST00000355354 ITSN1Q15811 1721 aa8.22□□□□□ -1.09
CD47-201ENST00000355354 BOD1L1Q8NFC6 3051 aa8.22□□□□□ -1.09
CD47-201ENST00000355354 L3MBTL2Q969R5 705 aa8.21□□□□□ -1.1
CD47-201ENST00000355354 TRPM1Q7Z4N2 1603 aa8.21□□□□□ -1.1
CD47-201ENST00000355354 SPINK5Q9NQ38 1064 aaPredicted RBP8.21□□□□□ -1.1
CD47-201ENST00000355354 DLC1Q96QB1 1528 aa8.21□□□□□ -1.1
CD47-201ENST00000355354 C20orf194Q5TEA3 1177 aa8.2□□□□□ -1.1
CD47-201ENST00000355354 NAIPQ13075 1403 aa8.2□□□□□ -1.1
CD47-201ENST00000355354 PARP4Q9UKK3 1724 aaKnown RBP8.2□□□□□ -1.1
CD47-201ENST00000355354 MYOM2P54296 1465 aa8.2□□□□□ -1.1
CD47-201ENST00000355354 PLIN1O60240 522 aa8.2□□□□□ -1.1
CD47-201ENST00000355354 CCDC136Q96JN2 1154 aa8.2□□□□□ -1.1
CD47-201ENST00000355354 ZEB1P37275 1124 aaPredicted RBP8.19□□□□□ -1.1
CD47-201ENST00000355354 NBPF1Q3BBV0 1214 aa8.18□□□□□ -1.1
CD47-201ENST00000355354 TNNQ9UQP3 1299 aa8.18□□□□□ -1.1
CD47-201ENST00000355354 RGPD1P0DJD0 1748 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 SLC4A3P48751 1232 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 BCL11AQ9H165 835 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 CFDP1Q9UEE9 299 aaPredicted RBP8.17□□□□□ -1.1
CD47-201ENST00000355354 ANKRD26Q9UPS8 1709 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 IL27Q8NEV9 243 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 FBLN1P23142 703 aa8.17□□□□□ -1.1
CD47-201ENST00000355354 ANO8Q9HCE9 1232 aaPredicted RBP8.17□□□□□ -1.1
CD47-201ENST00000355354 TUBGCP6Q96RT7 1819 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 HFM1A2PYH4 1435 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 BCL9LQ86UU0 1499 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 CAMTA1Q9Y6Y1 1673 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 MON2Q7Z3U7 1717 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 PAPPAQ13219 1627 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 FAM9BQ8IZU0 186 aa8.16□□□□□ -1.1
CD47-201ENST00000355354 ANKRD50Q9ULJ7 1429 aa8.15□□□□□ -1.1
CD47-201ENST00000355354 PIK3C2GO75747 1445 aa8.15□□□□□ -1.1
CD47-201ENST00000355354 HSPA5P11021 654 aaKnown RBP8.13□□□□□ -1.11
CD47-201ENST00000355354 RIMS2Q9UQ26 1411 aa8.13□□□□□ -1.11
CD47-201ENST00000355354 DTNBO60941 627 aa8.13□□□□□ -1.11
CD47-201ENST00000355354 RGPD5Q99666 1765 aa8.13□□□□□ -1.11
CD47-201ENST00000355354 RTN4Q9NQC3 1192 aaKnown RBP8.12□□□□□ -1.11
CD47-201ENST00000355354 HSPA1LP34931 641 aa8.12□□□□□ -1.11
CD47-201ENST00000355354 ADGRL3Q9HAR2 1447 aa8.12□□□□□ -1.11
CD47-201ENST00000355354 CFAP47Q6ZTR5 3102 aa8.12□□□□□ -1.11
CD47-201ENST00000355354 COL14A1Q05707 1796 aaKnown RBP8.12□□□□□ -1.11
CD47-201ENST00000355354 PIK3C2AO00443 1686 aa8.11□□□□□ -1.11
CD47-201ENST00000355354 HNRNPUQ00839 825 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD47-201ENST00000355354 ARID4BQ4LE39 1312 aaPredicted RBP8.1□□□□□ -1.11
CD47-201ENST00000355354 SLIT2O94813 1529 aa8.1□□□□□ -1.11
CD47-201ENST00000355354 ATRNO75882 1429 aa8.1□□□□□ -1.11
CD47-201ENST00000355354 CHD7Q9P2D1 2997 aa8.09□□□□□ -1.11
CD47-201ENST00000355354 LRRC37A3O60309 1634 aa8.09□□□□□ -1.11
CD47-201ENST00000355354 ZNF326Q5BKZ1 582 aaKnown RBP8.09□□□□□ -1.11
CD47-201ENST00000355354 RGS12O14924 1447 aa8.09□□□□□ -1.11
CD47-201ENST00000355354 METP08581 1390 aa8.09□□□□□ -1.11
CD47-201ENST00000355354 IDI1Q13907 227 aa8.08□□□□□ -1.12
CD47-201ENST00000355354 TMEM94Q12767 1356 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms