RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CYB5RLQ6IPT4 315 aa28.54■■■□□ 2.16
SHMT1-202ENST00000352886 NKTRP30414 1462 aaKnown RBP28.53■■■□□ 2.16
SHMT1-202ENST00000352886 ANP32AP39687 249 aaKnown RBP28.53■■■□□ 2.16
SHMT1-202ENST00000352886 CGNL1Q0VF96 1302 aa28.52■■■□□ 2.16
SHMT1-202ENST00000352886 NGEFQ8N5V2 710 aa28.52■■■□□ 2.16
SHMT1-202ENST00000352886 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.52■■■□□ 2.16
SHMT1-202ENST00000352886 ZFYVE9O95405 1425 aa28.52■■■□□ 2.16
SHMT1-202ENST00000352886 PUS7Q96PZ0 661 aaKnown RBP28.51■■■□□ 2.15
SHMT1-202ENST00000352886 E9PSI1 815 aa28.51■■■□□ 2.15
SHMT1-202ENST00000352886 TMEM131LA2VDJ0 1609 aa28.5■■■□□ 2.15
SHMT1-202ENST00000352886 SENP3Q9H4L4 574 aaPredicted RBP28.49■■■□□ 2.15
SHMT1-202ENST00000352886 NOP58Q9Y2X3 529 aaKnown RBP28.49■■■□□ 2.15
SHMT1-202ENST00000352886 ANKRD36BQ8N2N9 1353 aa28.48■■■□□ 2.15
SHMT1-202ENST00000352886 SAFB2Q14151 953 aaKnown RBP eCLIP28.48■■■□□ 2.15
SHMT1-202ENST00000352886 DMRT2Q9Y5R5 561 aa28.48■■■□□ 2.15
SHMT1-202ENST00000352886 MS4A1P11836 297 aa28.47■■■□□ 2.15
SHMT1-202ENST00000352886 CABP2Q9NPB3 220 aa28.47■■■□□ 2.15
SHMT1-202ENST00000352886 STK26Q9P289 416 aa28.45■■■□□ 2.15
SHMT1-202ENST00000352886 PDE4AP27815 886 aa28.45■■■□□ 2.14
SHMT1-202ENST00000352886 IPO9Q96P70 1041 aaKnown RBP28.44■■■□□ 2.14
SHMT1-202ENST00000352886 MTHFSP49914 203 aa28.44■■■□□ 2.14
SHMT1-202ENST00000352886 WWC1Q8IX03 1113 aa28.44■■■□□ 2.14
SHMT1-202ENST00000352886 KDM2BQ8NHM5 1336 aa28.42■■■□□ 2.14
SHMT1-202ENST00000352886 FAM69CQ0P6D2 419 aa28.42■■■□□ 2.14
SHMT1-202ENST00000352886 SKAP1Q86WV1 359 aa28.42■■■□□ 2.14
SHMT1-202ENST00000352886 NSD2O96028 1365 aa28.41■■■□□ 2.14
SHMT1-202ENST00000352886 FBXO31Q5XUX0 539 aaPredicted RBP28.41■■■□□ 2.14
SHMT1-202ENST00000352886 BCAR3O75815 825 aa28.41■■■□□ 2.14
SHMT1-202ENST00000352886 PAK3O75914 559 aaPredicted RBP28.41■■■□□ 2.14
SHMT1-202ENST00000352886 RUNDC1Q96C34 613 aa28.41■■■□□ 2.14
SHMT1-202ENST00000352886 BACH2Q9BYV9 841 aa28.41■■■□□ 2.14
SHMT1-202ENST00000352886 TSPOAP1O95153 1857 aa28.41■■■□□ 2.14
SHMT1-202ENST00000352886 CFAP53Q96M91 514 aa28.4■■■□□ 2.14
SHMT1-202ENST00000352886 DIP2BQ9P265 1576 aa28.39■■■□□ 2.14
SHMT1-202ENST00000352886 PTPRMP28827 1452 aa28.39■■■□□ 2.13
SHMT1-202ENST00000352886 IQSEC2Q5JU85 1478 aa28.38■■■□□ 2.13
SHMT1-202ENST00000352886 SRPK2P78362 688 aaKnown RBP28.38■■■□□ 2.13
SHMT1-202ENST00000352886 NEUROD2Q15784 382 aa28.38■■■□□ 2.13
SHMT1-202ENST00000352886 CENPQQ7L2Z9 268 aaPredicted RBP28.38■■■□□ 2.13
SHMT1-202ENST00000352886 RRP7AQ9Y3A4 280 aaKnown RBP28.37■■■□□ 2.13
SHMT1-202ENST00000352886 RIMBP3CA6NJZ7 1639 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 RIMBP3BA6NNM3 1639 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 RIMBP3Q9UFD9 1639 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 TCP11L2Q8N4U5 519 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 A0A1W2PP64 1363 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 NINLQ9Y2I6 1382 aa28.36■■■□□ 2.13
SHMT1-202ENST00000352886 YTHDC2Q9H6S0 1430 aaKnown RBP28.35■■■□□ 2.13
SHMT1-202ENST00000352886 NPM2Q86SE8 214 aaKnown RBP28.34■■■□□ 2.13
SHMT1-202ENST00000352886 PRAM1Q96QH2 718 aa28.34■■■□□ 2.13
SHMT1-202ENST00000352886 MINK1Q8N4C8 1332 aaPredicted RBP28.33■■■□□ 2.13
SHMT1-202ENST00000352886 ABCC11Q96J66 1382 aa28.33■■■□□ 2.13
SHMT1-202ENST00000352886 ZBTB47Q9UFB7 747 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-202ENST00000352886 POGKQ9P215 609 aa28.31■■■□□ 2.12
SHMT1-202ENST00000352886 ALKQ9UM73 1620 aa28.31■■■□□ 2.12
SHMT1-202ENST00000352886 STAG3Q9UJ98 1225 aa28.31■■■□□ 2.12
SHMT1-202ENST00000352886 CLTCQ00610 1675 aaKnown RBP28.3■■■□□ 2.12
SHMT1-202ENST00000352886 PHF23Q9BUL5 403 aaPredicted RBP28.3■■■□□ 2.12
SHMT1-202ENST00000352886 ATAD2Q6PL18 1390 aa28.3■■■□□ 2.12
SHMT1-202ENST00000352886 REREQ9P2R6 1566 aa28.29■■■□□ 2.12
SHMT1-202ENST00000352886 U2AF1L5P0DN76 240 aaPredicted RBP28.27■■■□□ 2.12
SHMT1-202ENST00000352886 U2AF1Q01081 240 aaKnown RBP eCLIP28.27■■■□□ 2.12
SHMT1-202ENST00000352886 AGLP35573 1532 aa28.27■■■□□ 2.12
SHMT1-202ENST00000352886 WDR63Q8IWG1 891 aa28.26■■■□□ 2.11
SHMT1-202ENST00000352886 GGNBP2Q9H3C7 697 aa28.26■■■□□ 2.11
SHMT1-202ENST00000352886 TERF2IPQ9NYB0 399 aa28.25■■■□□ 2.11
SHMT1-202ENST00000352886 CCDC27Q2M243 656 aa28.24■■■□□ 2.11
SHMT1-202ENST00000352886 ANKRD26Q9UPS8 1709 aa28.24■■■□□ 2.11
SHMT1-202ENST00000352886 PDE3AQ14432 1141 aa28.24■■■□□ 2.11
SHMT1-202ENST00000352886 CD163L1Q9NR16 1453 aa28.24■■■□□ 2.11
SHMT1-202ENST00000352886 CANXP27824 592 aaKnown RBP28.23■■■□□ 2.11
SHMT1-202ENST00000352886 PPP6R1Q9UPN7 881 aa28.23■■■□□ 2.11
SHMT1-202ENST00000352886 ADGRB2O60241 1585 aa28.21■■■□□ 2.11
SHMT1-202ENST00000352886 FYB1O15117 783 aa28.2■■■□□ 2.11
SHMT1-202ENST00000352886 CDK19Q9BWU1 502 aa28.19■■■□□ 2.1
SHMT1-202ENST00000352886 A2ML1A8K2U0 1454 aa28.19■■■□□ 2.1
SHMT1-202ENST00000352886 ARHGEF40Q8TER5 1519 aa28.19■■■□□ 2.1
SHMT1-202ENST00000352886 SPATA31D1Q6ZQQ2 1576 aa28.19■■■□□ 2.1
SHMT1-202ENST00000352886 RARSP54136 660 aaKnown RBP28.19■■■□□ 2.1
SHMT1-202ENST00000352886 NLRP1Q9C000 1473 aa28.18■■■□□ 2.1
SHMT1-202ENST00000352886 FRAT1Q92837 279 aaPredicted RBP28.18■■■□□ 2.1
SHMT1-202ENST00000352886 MED14O60244 1454 aa28.18■■■□□ 2.1
SHMT1-202ENST00000352886 NCBP3Q53F19 620 aaKnown RBP28.18■■■□□ 2.1
SHMT1-202ENST00000352886 PANK1Q8TE04 598 aa28.18■■■□□ 2.1
SHMT1-202ENST00000352886 COG6Q9Y2V7 657 aa28.17■■■□□ 2.1
SHMT1-202ENST00000352886 COL3A1P02461 1466 aaPredicted RBP28.16■■■□□ 2.1
SHMT1-202ENST00000352886 MLECQ14165 292 aa28.16■■■□□ 2.1
SHMT1-202ENST00000352886 HDGFL2Q7Z4V5 671 aaPredicted RBP28.16■■■□□ 2.1
SHMT1-202ENST00000352886 U2SURPO15042 1029 aaKnown RBP28.16■■■□□ 2.1
SHMT1-202ENST00000352886 NBR1Q14596 966 aa28.15■■■□□ 2.1
SHMT1-202ENST00000352886 CABP1Q9NZU7 370 aa28.14■■■□□ 2.1
SHMT1-202ENST00000352886 RIMS2Q9UQ26 1411 aa28.14■■■□□ 2.1
SHMT1-202ENST00000352886 KIF20BQ96Q89 1820 aa28.14■■■□□ 2.1
SHMT1-202ENST00000352886 MYH16Q9H6N6 1097 aa28.14■■■□□ 2.1
SHMT1-202ENST00000352886 SETD1AO15047 1707 aaKnown RBP28.14■■■□□ 2.09
SHMT1-202ENST00000352886 RGS3P49796 1198 aa28.13■■■□□ 2.09
SHMT1-202ENST00000352886 CLUAP1Q96AJ1 413 aa28.13■■■□□ 2.09
SHMT1-202ENST00000352886 DLC1Q96QB1 1528 aa28.12■■■□□ 2.09
SHMT1-202ENST00000352886 IGHDP01880 384 aa28.12■■■□□ 2.09
SHMT1-202ENST00000352886 PLEKHF1Q96S99 279 aa28.11■■■□□ 2.09
SHMT1-202ENST00000352886 FAM161AQ3B820 660 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms