RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 SBNO1A3KN83 1393 aa11.26□□□□□ -0.61
ZNF540-202ENST00000343599 TMEM94Q12767 1356 aa11.26□□□□□ -0.61
ZNF540-202ENST00000343599 PLEKHG2Q9H7P9 1386 aa11.26□□□□□ -0.61
ZNF540-202ENST00000343599 ATAD2Q6PL18 1390 aa11.25□□□□□ -0.61
ZNF540-202ENST00000343599 GLI3P10071 1580 aa11.25□□□□□ -0.61
ZNF540-202ENST00000343599 SLIT2O94813 1529 aa11.25□□□□□ -0.61
ZNF540-202ENST00000343599 KIF3BO15066 747 aa11.24□□□□□ -0.61
ZNF540-202ENST00000343599 UBTFP17480 764 aaKnown RBP11.24□□□□□ -0.61
ZNF540-202ENST00000343599 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
ZNF540-202ENST00000343599 C19orf44Q9H6X5 657 aa11.22□□□□□ -0.61
ZNF540-202ENST00000343599 SOS2Q07890 1332 aaPredicted RBP11.22□□□□□ -0.61
ZNF540-202ENST00000343599 ANKRD30BQ9BXX2 1392 aa11.21□□□□□ -0.62
ZNF540-202ENST00000343599 RGS17Q9UGC6 210 aaPredicted RBP11.21□□□□□ -0.62
ZNF540-202ENST00000343599 PEAK1Q9H792 1746 aa11.2□□□□□ -0.62
ZNF540-202ENST00000343599 C1orf167Q5SNV9 1468 aa11.2□□□□□ -0.62
ZNF540-202ENST00000343599 PTPRUQ92729 1446 aa11.19□□□□□ -0.62
ZNF540-202ENST00000343599 ABCC11Q96J66 1382 aa11.19□□□□□ -0.62
ZNF540-202ENST00000343599 LMO7Q8WWI1 1683 aa11.19□□□□□ -0.62
ZNF540-202ENST00000343599 CASZ1Q86V15 1759 aa11.18□□□□□ -0.62
ZNF540-202ENST00000343599 ZNF831Q5JPB2 1677 aa11.18□□□□□ -0.62
ZNF540-202ENST00000343599 BRWD3Q6RI45 1802 aa11.18□□□□□ -0.62
ZNF540-202ENST00000343599 TULP1O00294 542 aaPredicted RBP11.17□□□□□ -0.62
ZNF540-202ENST00000343599 NUP188Q5SRE5 1749 aa11.17□□□□□ -0.62
ZNF540-202ENST00000343599 FNBP4Q8N3X1 1017 aaPredicted RBP11.17□□□□□ -0.62
ZNF540-202ENST00000343599 CAMTA1Q9Y6Y1 1673 aa11.16□□□□□ -0.62
ZNF540-202ENST00000343599 ZBTB22O15209 634 aa11.16□□□□□ -0.62
ZNF540-202ENST00000343599 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
ZNF540-202ENST00000343599 SPATA31E1Q6ZUB1 1445 aa11.16□□□□□ -0.62
ZNF540-202ENST00000343599 TXNDC2Q86VQ3 553 aa11.16□□□□□ -0.62
ZNF540-202ENST00000343599 MLECQ14165 292 aa11.15□□□□□ -0.62
ZNF540-202ENST00000343599 PIK3C2GO75747 1445 aa11.15□□□□□ -0.62
ZNF540-202ENST00000343599 LTKP29376 864 aa11.15□□□□□ -0.62
ZNF540-202ENST00000343599 RGS12O14924 1447 aa11.15□□□□□ -0.62
ZNF540-202ENST00000343599 CICQ96RK0 1608 aaPredicted RBP11.15□□□□□ -0.63
ZNF540-202ENST00000343599 BCL9LQ86UU0 1499 aa11.14□□□□□ -0.63
ZNF540-202ENST00000343599 HMGB2P26583 209 aaKnown RBP11.14□□□□□ -0.63
ZNF540-202ENST00000343599 BLMP54132 1417 aaPredicted RBP11.14□□□□□ -0.63
ZNF540-202ENST00000343599 BCL11AQ9H165 835 aa11.14□□□□□ -0.63
ZNF540-202ENST00000343599 TAOK2Q9UL54 1235 aa11.14□□□□□ -0.63
ZNF540-202ENST00000343599 TULP4Q9NRJ4 1543 aa11.13□□□□□ -0.63
ZNF540-202ENST00000343599 AATKQ6ZMQ8 1374 aa11.13□□□□□ -0.63
ZNF540-202ENST00000343599 ARHGEF28Q8N1W1 1705 aaKnown RBP11.13□□□□□ -0.63
ZNF540-202ENST00000343599 SLAIN2Q9P270 581 aa11.12□□□□□ -0.63
ZNF540-202ENST00000343599 GGT6Q6P531 493 aa11.12□□□□□ -0.63
ZNF540-202ENST00000343599 LRRC59Q96AG4 307 aaKnown RBP11.12□□□□□ -0.63
ZNF540-202ENST00000343599 PCGF6Q9BYE7 350 aa11.12□□□□□ -0.63
ZNF540-202ENST00000343599 AKAP12Q02952 1782 aa11.12□□□□□ -0.63
ZNF540-202ENST00000343599 ADGRB1O14514 1584 aa11.11□□□□□ -0.63
ZNF540-202ENST00000343599 NAIPQ13075 1403 aa11.11□□□□□ -0.63
ZNF540-202ENST00000343599 RBM6P78332 1123 aaKnown RBP11.1□□□□□ -0.63
ZNF540-202ENST00000343599 ARHGEF10O15013 1369 aa11.1□□□□□ -0.63
ZNF540-202ENST00000343599 SLIT3O75094 1523 aa11.09□□□□□ -0.63
ZNF540-202ENST00000343599 FBXO31Q5XUX0 539 aaPredicted RBP11.09□□□□□ -0.63
ZNF540-202ENST00000343599 ZNF644Q9H582 1327 aaPredicted RBP11.09□□□□□ -0.63
ZNF540-202ENST00000343599 IDI1Q13907 227 aa11.09□□□□□ -0.63
ZNF540-202ENST00000343599 NGLY1Q96IV0 654 aa11.08□□□□□ -0.64
ZNF540-202ENST00000343599 PPP1R15AO75807 674 aaPredicted RBP11.07□□□□□ -0.64
ZNF540-202ENST00000343599 NRKQ7Z2Y5 1582 aa11.07□□□□□ -0.64
ZNF540-202ENST00000343599 MAP3K5Q99683 1374 aa11.07□□□□□ -0.64
ZNF540-202ENST00000343599 SBF2Q86WG5 1849 aa11.07□□□□□ -0.64
ZNF540-202ENST00000343599 UPF1Q92900 1129 aaKnown RBP eCLIP11.07□□□□□ -0.64
ZNF540-202ENST00000343599 TPRNQ4KMQ1 711 aa11.06□□□□□ -0.64
ZNF540-202ENST00000343599 PAPPAQ13219 1627 aa11.05□□□□□ -0.64
ZNF540-202ENST00000343599 TNS3Q68CZ2 1445 aa11.05□□□□□ -0.64
ZNF540-202ENST00000343599 NHSQ6T4R5 1651 aa11.05□□□□□ -0.64
ZNF540-202ENST00000343599 COL18A1P39060 1754 aa11.04□□□□□ -0.64
ZNF540-202ENST00000343599 CFAP65Q6ZU64 1925 aaKnown RBP11.03□□□□□ -0.64
ZNF540-202ENST00000343599 ERICH6Q7L0X2 663 aa11.03□□□□□ -0.64
ZNF540-202ENST00000343599 MON2Q7Z3U7 1717 aa11.02□□□□□ -0.65
ZNF540-202ENST00000343599 VGFO15240 615 aaPredicted RBP11.02□□□□□ -0.65
ZNF540-202ENST00000343599 APLP2Q06481 763 aa11.02□□□□□ -0.65
ZNF540-202ENST00000343599 PROSER2Q86WR7 435 aaPredicted RBP11.02□□□□□ -0.65
ZNF540-202ENST00000343599 TRPC5Q9UL62 973 aaPredicted RBP11.01□□□□□ -0.65
ZNF540-202ENST00000343599 NPHP3Q7Z494 1330 aa11.01□□□□□ -0.65
ZNF540-202ENST00000343599 CPDO75976 1380 aa11.01□□□□□ -0.65
ZNF540-202ENST00000343599 DHX57Q6P158 1386 aaKnown RBP11.01□□□□□ -0.65
ZNF540-202ENST00000343599 RXRBP28702 533 aa11□□□□□ -0.65
ZNF540-202ENST00000343599 BRINP3Q76B58 766 aa11□□□□□ -0.65
ZNF540-202ENST00000343599 NUP155O75694 1391 aa10.99□□□□□ -0.65
ZNF540-202ENST00000343599 MYT1LQ9UL68 1186 aa10.99□□□□□ -0.65
ZNF540-202ENST00000343599 NINLQ9Y2I6 1382 aa10.98□□□□□ -0.65
ZNF540-202ENST00000343599 POTEAQ6S8J7 498 aa10.98□□□□□ -0.65
ZNF540-202ENST00000343599 ATF3P18847 181 aa10.98□□□□□ -0.65
ZNF540-202ENST00000343599 ZNF777Q9ULD5 760 aaPredicted RBP10.98□□□□□ -0.65
ZNF540-202ENST00000343599 CENPBP07199 599 aaPredicted RBP10.97□□□□□ -0.65
ZNF540-202ENST00000343599 POLR3AO14802 1390 aaPredicted RBP10.96□□□□□ -0.66
ZNF540-202ENST00000343599 LRRC37A3O60309 1634 aa10.96□□□□□ -0.66
ZNF540-202ENST00000343599 ARID3CA6NKF2 412 aa10.95□□□□□ -0.66
ZNF540-202ENST00000343599 VPS72Q15906 364 aa10.95□□□□□ -0.66
ZNF540-202ENST00000343599 PUS7Q96PZ0 661 aaKnown RBP10.95□□□□□ -0.66
ZNF540-202ENST00000343599 ANKRD26Q9UPS8 1709 aa10.94□□□□□ -0.66
ZNF540-202ENST00000343599 ZEB1P37275 1124 aaPredicted RBP10.94□□□□□ -0.66
ZNF540-202ENST00000343599 PIK3C2AO00443 1686 aa10.94□□□□□ -0.66
ZNF540-202ENST00000343599 LY75O60449 1722 aa10.93□□□□□ -0.66
ZNF540-202ENST00000343599 RGPD8O14715 1765 aaPredicted RBP10.93□□□□□ -0.66
ZNF540-202ENST00000343599 YTHDC2Q9H6S0 1430 aaKnown RBP10.93□□□□□ -0.66
ZNF540-202ENST00000343599 THRAP3Q9Y2W1 955 aaKnown RBP10.92□□□□□ -0.66
ZNF540-202ENST00000343599 SBNO2Q9Y2G9 1366 aa10.92□□□□□ -0.66
ZNF540-202ENST00000343599 NEUROD1Q13562 356 aa10.91□□□□□ -0.66
ZNF540-202ENST00000343599 METP08581 1390 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms