RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 SDF4Q9BRK5 362 aa21.04■□□□□ 0.96
SMAD4-201ENST00000342988 CCNB3Q8WWL7 1395 aa21.03■□□□□ 0.96
SMAD4-201ENST00000342988 IFIT2P09913 472 aaKnown RBP21.03■□□□□ 0.96
SMAD4-201ENST00000342988 MAP2K1Q02750 393 aaPredicted RBP21.03■□□□□ 0.96
SMAD4-201ENST00000342988 FBXW7Q969H0 707 aa21.02■□□□□ 0.96
SMAD4-201ENST00000342988 SLC3A2P08195 630 aaKnown RBP21.02■□□□□ 0.96
SMAD4-201ENST00000342988 SAFB2Q14151 953 aaKnown RBP eCLIP21.02■□□□□ 0.96
SMAD4-201ENST00000342988 PKNOX2Q96KN3 472 aa21.02■□□□□ 0.96
SMAD4-201ENST00000342988 SMC2O95347 1197 aa21.02■□□□□ 0.95
SMAD4-201ENST00000342988 FAM107BQ9H098 131 aa21.01■□□□□ 0.95
SMAD4-201ENST00000342988 VPS37CA5D8V6 355 aaPredicted RBP21.01■□□□□ 0.95
SMAD4-201ENST00000342988 DACH1Q9UI36 760 aa21.01■□□□□ 0.95
SMAD4-201ENST00000342988 PSMA5P28066 241 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 TRIM5Q9C035 493 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 ERC2O15083 957 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 ANAPC15P60006 121 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 JAKMIP3Q5VZ66 844 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 PDCL3Q9H2J4 239 aa21■□□□□ 0.95
SMAD4-201ENST00000342988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21■□□□□ 0.95
SMAD4-201ENST00000342988 GIGYF2Q6Y7W6 1299 aaKnown RBP21■□□□□ 0.95
SMAD4-201ENST00000342988 PDCP20941 246 aa20.99■□□□□ 0.95
SMAD4-201ENST00000342988 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.99■□□□□ 0.95
SMAD4-201ENST00000342988 V9GYY5 206 aaPredicted RBP20.99■□□□□ 0.95
SMAD4-201ENST00000342988 DDX58O95786 925 aaKnown RBP20.99■□□□□ 0.95
SMAD4-201ENST00000342988 INTS3Q68E01 1043 aaKnown RBP20.99■□□□□ 0.95
SMAD4-201ENST00000342988 MCM3P25205 808 aa20.98■□□□□ 0.95
SMAD4-201ENST00000342988 PODXL2Q9NZ53 605 aa20.98■□□□□ 0.95
SMAD4-201ENST00000342988 STK26Q9P289 416 aa20.98■□□□□ 0.95
SMAD4-201ENST00000342988 IKQ13123 557 aaPredicted RBP20.98■□□□□ 0.95
SMAD4-201ENST00000342988 KRT18P05783 430 aaKnown RBP20.98■□□□□ 0.95
SMAD4-201ENST00000342988 TTC5Q8N0Z6 440 aa20.97■□□□□ 0.95
SMAD4-201ENST00000342988 PPFIBP1Q86W92 1011 aa20.97■□□□□ 0.95
SMAD4-201ENST00000342988 CETN2P41208 172 aa20.97■□□□□ 0.95
SMAD4-201ENST00000342988 POTEJP0CG39 1038 aa20.96■□□□□ 0.95
SMAD4-201ENST00000342988 MAP9Q49MG5 647 aa20.96■□□□□ 0.95
SMAD4-201ENST00000342988 CFAP45Q9UL16 551 aa20.96■□□□□ 0.95
SMAD4-201ENST00000342988 SHTN1A0MZ66 631 aa20.95■□□□□ 0.94
SMAD4-201ENST00000342988 JMYQ8N9B5 988 aa20.95■□□□□ 0.94
SMAD4-201ENST00000342988 MSH5O43196 834 aa20.94■□□□□ 0.94
SMAD4-201ENST00000342988 CEP162Q5TB80 1403 aa20.94■□□□□ 0.94
SMAD4-201ENST00000342988 EVA1CP58658 441 aa20.93■□□□□ 0.94
SMAD4-201ENST00000342988 POLR3GO15318 223 aaPredicted RBP20.93■□□□□ 0.94
SMAD4-201ENST00000342988 MICALCLQ6ZW33 695 aa20.93■□□□□ 0.94
SMAD4-201ENST00000342988 DZIP1LQ8IYY4 767 aaKnown RBP20.93■□□□□ 0.94
SMAD4-201ENST00000342988 EID1Q9Y6B2 187 aa20.93■□□□□ 0.94
SMAD4-201ENST00000342988 ZNF396Q96N95 335 aaPredicted RBP20.93■□□□□ 0.94
SMAD4-201ENST00000342988 MRE11P49959 708 aa20.92■□□□□ 0.94
SMAD4-201ENST00000342988 ARHGAP35Q9NRY4 1499 aa20.92■□□□□ 0.94
SMAD4-201ENST00000342988 DAAM2Q86T65 1068 aa20.92■□□□□ 0.94
SMAD4-201ENST00000342988 MBD3O95983 291 aa20.92■□□□□ 0.94
SMAD4-201ENST00000342988 PPM1FP49593 454 aaPredicted RBP20.92■□□□□ 0.94
SMAD4-201ENST00000342988 G3BP1Q13283 466 aaKnown RBP eCLIP20.92■□□□□ 0.94
SMAD4-201ENST00000342988 LUZP1Q86V48 1076 aa20.91■□□□□ 0.94
SMAD4-201ENST00000342988 GCOM1H8Y6P7 765 aaPredicted RBP20.91■□□□□ 0.94
SMAD4-201ENST00000342988 MYZAPP0CAP1 466 aa20.91■□□□□ 0.94
SMAD4-201ENST00000342988 NGDNQ8NEJ9 315 aaKnown RBP20.91■□□□□ 0.94
SMAD4-201ENST00000342988 BMS1Q14692 1282 aaKnown RBP20.9■□□□□ 0.94
SMAD4-201ENST00000342988 CBFA2T2O43439 604 aa20.9■□□□□ 0.94
SMAD4-201ENST00000342988 LRRFIP2Q9Y608 721 aaKnown RBP20.9■□□□□ 0.94
SMAD4-201ENST00000342988 HOMER2Q9NSB8 354 aa20.9■□□□□ 0.94
SMAD4-201ENST00000342988 CEP164Q9UPV0 1460 aa20.89■□□□□ 0.94
SMAD4-201ENST00000342988 RSPH4AQ5TD94 716 aa20.89■□□□□ 0.94
SMAD4-201ENST00000342988 BRPF1P55201 1214 aaPredicted RBP20.89■□□□□ 0.93
SMAD4-201ENST00000342988 EPB41L2O43491 1005 aaKnown RBP20.88■□□□□ 0.93
SMAD4-201ENST00000342988 HMGB1P1B2RPK0 211 aaPredicted RBP20.88■□□□□ 0.93
SMAD4-201ENST00000342988 SEPT6Q14141 434 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 ERC1Q8IUD2 1116 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 CLUAP1Q96AJ1 413 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 GBP3Q9H0R5 595 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 DDX19BQ9UMR2 479 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 FERP16591 822 aa20.88■□□□□ 0.93
SMAD4-201ENST00000342988 ZNF397Q8NF99 534 aaPredicted RBP20.88■□□□□ 0.93
SMAD4-201ENST00000342988 SAMD1Q6SPF0 538 aaPredicted RBP20.87■□□□□ 0.93
SMAD4-201ENST00000342988 TSPY26PQ9H489 355 aa20.87■□□□□ 0.93
SMAD4-201ENST00000342988 EIF4G1Q04637 1599 aaKnown RBP20.87■□□□□ 0.93
SMAD4-201ENST00000342988 ZKSCAN2Q63HK3 967 aa20.87■□□□□ 0.93
SMAD4-201ENST00000342988 TMCO3Q6UWJ1 677 aa20.87■□□□□ 0.93
SMAD4-201ENST00000342988 FYB1O15117 783 aa20.87■□□□□ 0.93
SMAD4-201ENST00000342988 SERPINC1P01008 464 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 TEFQ10587 303 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 C6orf163Q5TEZ5 329 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 CRACR2AQ9BSW2 395 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 CCDC148Q8NFR7 591 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 PDCL2Q8N4E4 241 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 KIF15Q9NS87 1388 aa20.86■□□□□ 0.93
SMAD4-201ENST00000342988 MCM2P49736 904 aa20.85■□□□□ 0.93
SMAD4-201ENST00000342988 KIF27Q86VH2 1401 aa20.85■□□□□ 0.93
SMAD4-201ENST00000342988 HIP1O00291 1037 aa20.84■□□□□ 0.93
SMAD4-201ENST00000342988 FAM193AP78312 1265 aa20.84■□□□□ 0.93
SMAD4-201ENST00000342988 SREK1Q8WXA9 508 aaKnown RBP20.84■□□□□ 0.93
SMAD4-201ENST00000342988 TICAM2Q86XR7 235 aa20.84■□□□□ 0.93
SMAD4-201ENST00000342988 IMMTQ16891 758 aaKnown RBP20.83■□□□□ 0.93
SMAD4-201ENST00000342988 SMC1AQ14683 1233 aaKnown RBP20.83■□□□□ 0.92
SMAD4-201ENST00000342988 UACAQ9BZF9 1416 aa20.83■□□□□ 0.92
SMAD4-201ENST00000342988 PPP1R12BO60237 982 aaPredicted RBP20.83■□□□□ 0.92
SMAD4-201ENST00000342988 BCL11BQ9C0K0 894 aaPredicted RBP20.83■□□□□ 0.92
SMAD4-201ENST00000342988 ERCC6Q03468 1493 aa20.83■□□□□ 0.92
SMAD4-201ENST00000342988 CCDC102AQ96A19 550 aa20.82■□□□□ 0.92
SMAD4-201ENST00000342988 GTPBP4Q9BZE4 634 aaKnown RBP20.82■□□□□ 0.92
SMAD4-201ENST00000342988 HOOK3Q86VS8 718 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms