RNA–Protein interactions for RNA: ENST00000338862.5

PCDH8-201, Transcript of protocadherin 8, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH8, Length 3,708 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH8-201ENST00000338862 IFT140Q96RY7 1462 aa17.7■□□□□ 0.42
PCDH8-201ENST00000338862 PLCB2Q00722 1185 aa17.7■□□□□ 0.42
PCDH8-201ENST00000338862 NUTM2FA1L443 756 aa17.69■□□□□ 0.42
PCDH8-201ENST00000338862 ADAMTS12P58397 1594 aa17.69■□□□□ 0.42
PCDH8-201ENST00000338862 IPO8O15397 1037 aaKnown RBP17.69■□□□□ 0.42
PCDH8-201ENST00000338862 MPNDQ8N594 471 aa17.69■□□□□ 0.42
PCDH8-201ENST00000338862 RBM42Q9BTD8 480 aaKnown RBP17.69■□□□□ 0.42
PCDH8-201ENST00000338862 TRIM27P14373 513 aa17.69■□□□□ 0.42
PCDH8-201ENST00000338862 DDX19BQ9UMR2 479 aa17.69■□□□□ 0.42
PCDH8-201ENST00000338862 ZMYM4Q5VZL5 1548 aa17.68■□□□□ 0.42
PCDH8-201ENST00000338862 USP19O94966 1318 aa17.68■□□□□ 0.42
PCDH8-201ENST00000338862 GRPEL1Q9HAV7 217 aa17.67■□□□□ 0.42
PCDH8-201ENST00000338862 ZNF521Q96K83 1311 aa17.66■□□□□ 0.42
PCDH8-201ENST00000338862 DDX11L8A8MPP1 907 aa17.65■□□□□ 0.42
PCDH8-201ENST00000338862 PTMAP06454 111 aaKnown RBP17.65■□□□□ 0.42
PCDH8-201ENST00000338862 MSNP26038 577 aaKnown RBP17.65■□□□□ 0.42
PCDH8-201ENST00000338862 NPM1P06748 294 aaKnown RBP eCLIP17.65■□□□□ 0.42
PCDH8-201ENST00000338862 ARHGEF12Q9NZN5 1544 aa17.65■□□□□ 0.42
PCDH8-201ENST00000338862 ATF7IPQ6VMQ6 1270 aa17.65■□□□□ 0.42
PCDH8-201ENST00000338862 MCTP1Q6DN14 999 aa17.64■□□□□ 0.41
PCDH8-201ENST00000338862 SYCP2Q9BX26 1530 aa17.64■□□□□ 0.41
PCDH8-201ENST00000338862 MRE11P49959 708 aa17.64■□□□□ 0.41
PCDH8-201ENST00000338862 DNTTIP2Q5QJE6 756 aaKnown RBP17.63■□□□□ 0.41
PCDH8-201ENST00000338862 ADGRL2O95490 1459 aa17.63■□□□□ 0.41
PCDH8-201ENST00000338862 RBM10P98175 930 aaKnown RBP17.63■□□□□ 0.41
PCDH8-201ENST00000338862 SCAPERQ9BY12 1400 aa17.63■□□□□ 0.41
PCDH8-201ENST00000338862 SLC4A10Q6U841 1118 aa17.63■□□□□ 0.41
PCDH8-201ENST00000338862 TNPO1Q92973 898 aaKnown RBP17.62■□□□□ 0.41
PCDH8-201ENST00000338862 PLA2R1Q13018 1463 aa17.62■□□□□ 0.41
PCDH8-201ENST00000338862 MLECQ14165 292 aa17.61■□□□□ 0.41
PCDH8-201ENST00000338862 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
PCDH8-201ENST00000338862 TMPOP42166 694 aaKnown RBP17.61■□□□□ 0.41
PCDH8-201ENST00000338862 WDR63Q8IWG1 891 aa17.61■□□□□ 0.41
PCDH8-201ENST00000338862 ESPNB1AK53 854 aa17.6■□□□□ 0.41
PCDH8-201ENST00000338862 CALD1Q05682 793 aaKnown RBP17.6■□□□□ 0.41
PCDH8-201ENST00000338862 RNF214Q8ND24 703 aa17.6■□□□□ 0.41
PCDH8-201ENST00000338862 DIAPH1O60610 1272 aaKnown RBP17.6■□□□□ 0.41
PCDH8-201ENST00000338862 PRKAR2BP31323 418 aa17.6■□□□□ 0.41
PCDH8-201ENST00000338862 GPRASP1Q5JY77 1395 aa17.6■□□□□ 0.41
PCDH8-201ENST00000338862 CAVIN1Q6NZI2 390 aaKnown RBP17.6■□□□□ 0.41
PCDH8-201ENST00000338862 EVC2Q86UK5 1308 aa17.59■□□□□ 0.41
PCDH8-201ENST00000338862 SSFA2P28290 1259 aa17.59■□□□□ 0.41
PCDH8-201ENST00000338862 ASXL1Q8IXJ9 1541 aa17.59■□□□□ 0.41
PCDH8-201ENST00000338862 PBRM1Q86U86 1689 aa17.59■□□□□ 0.41
PCDH8-201ENST00000338862 FAM13BQ9NYF5 915 aa17.59■□□□□ 0.41
PCDH8-201ENST00000338862 SCAF11Q99590 1463 aaKnown RBP17.58■□□□□ 0.4
PCDH8-201ENST00000338862 CHD1LQ86WJ1 897 aa17.58■□□□□ 0.4
PCDH8-201ENST00000338862 TRMT2AQ8IZ69 625 aaKnown RBP17.58■□□□□ 0.4
PCDH8-201ENST00000338862 ITSN2Q9NZM3 1697 aa17.57■□□□□ 0.4
PCDH8-201ENST00000338862 DCTN1Q14203 1278 aa17.57■□□□□ 0.4
PCDH8-201ENST00000338862 UBE2Q2Q8WVN8 375 aa17.57■□□□□ 0.4
PCDH8-201ENST00000338862 NECTIN2Q92692 538 aa17.57■□□□□ 0.4
PCDH8-201ENST00000338862 NASPP49321 788 aaPredicted RBP17.57■□□□□ 0.4
PCDH8-201ENST00000338862 HDGFL2Q7Z4V5 671 aaPredicted RBP17.56■□□□□ 0.4
PCDH8-201ENST00000338862 NGEFQ8N5V2 710 aa17.56■□□□□ 0.4
PCDH8-201ENST00000338862 WDR7Q9Y4E6 1490 aa17.55■□□□□ 0.4
PCDH8-201ENST00000338862 ANTXR1Q9H6X2 564 aa17.54■□□□□ 0.4
PCDH8-201ENST00000338862 TERF2IPQ9NYB0 399 aa17.54■□□□□ 0.4
PCDH8-201ENST00000338862 TRAPPC8Q9Y2L5 1435 aa17.54■□□□□ 0.4
PCDH8-201ENST00000338862 R3HCC1Q9Y3T6 440 aaKnown RBP17.54■□□□□ 0.4
PCDH8-201ENST00000338862 PRPF40AO75400 957 aaKnown RBP17.53■□□□□ 0.4
PCDH8-201ENST00000338862 SMARCA5O60264 1052 aaPredicted RBP17.52■□□□□ 0.4
PCDH8-201ENST00000338862 KDM5DQ9BY66 1539 aa17.52■□□□□ 0.4
PCDH8-201ENST00000338862 CABP1Q9NZU7 370 aa17.52■□□□□ 0.4
PCDH8-201ENST00000338862 CASC1Q6TDU7 716 aa17.52■□□□□ 0.39
PCDH8-201ENST00000338862 CHAMP1Q96JM3 812 aa17.52■□□□□ 0.39
PCDH8-201ENST00000338862 PRAM1Q96QH2 718 aa17.52■□□□□ 0.39
PCDH8-201ENST00000338862 TRIM6-TRIM34B2RNG4 842 aa17.51■□□□□ 0.39
PCDH8-201ENST00000338862 C16orf71Q8IYS4 520 aaPredicted RBP17.5■□□□□ 0.39
PCDH8-201ENST00000338862 GAS2L3Q86XJ1 694 aa17.5■□□□□ 0.39
PCDH8-201ENST00000338862 PIK3C2GO75747 1445 aa17.5■□□□□ 0.39
PCDH8-201ENST00000338862 KIF16BQ96L93 1317 aa17.5■□□□□ 0.39
PCDH8-201ENST00000338862 KIAA1211Q6ZU35 1233 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 FAM83GA6ND36 823 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 K7ELQ4 463 aaPredicted RBP17.49■□□□□ 0.39
PCDH8-201ENST00000338862 TBC1D9Q6ZT07 1266 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 TSPYL6Q8N831 410 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 RILPL2Q969X0 211 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 NOS1P29475 1434 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 ATAD2Q6PL18 1390 aa17.49■□□□□ 0.39
PCDH8-201ENST00000338862 BCL11BQ9C0K0 894 aaPredicted RBP17.49■□□□□ 0.39
PCDH8-201ENST00000338862 CD2BP2O95400 341 aaKnown RBP17.48■□□□□ 0.39
PCDH8-201ENST00000338862 ADGBQ8N7X0 1667 aa17.48■□□□□ 0.39
PCDH8-201ENST00000338862 ABCC10Q5T3U5 1492 aa17.48■□□□□ 0.39
PCDH8-201ENST00000338862 GAS2L2Q8NHY3 880 aa17.48■□□□□ 0.39
PCDH8-201ENST00000338862 ZNF428Q96B54 188 aa17.48■□□□□ 0.39
PCDH8-201ENST00000338862 RBM27Q9P2N5 1060 aaKnown RBP17.48■□□□□ 0.39
PCDH8-201ENST00000338862 TSHZ3Q63HK5 1081 aa17.47■□□□□ 0.39
PCDH8-201ENST00000338862 VGFO15240 615 aaPredicted RBP17.47■□□□□ 0.39
PCDH8-201ENST00000338862 RRS1Q15050 365 aaKnown RBP17.47■□□□□ 0.39
PCDH8-201ENST00000338862 CEP170Q5SW79 1584 aa17.47■□□□□ 0.39
PCDH8-201ENST00000338862 MIS18AQ9NYP9 233 aa17.47■□□□□ 0.39
PCDH8-201ENST00000338862 DTNBO60941 627 aa17.46■□□□□ 0.39
PCDH8-201ENST00000338862 TWISTNBQ3B726 338 aaPredicted RBP17.46■□□□□ 0.39
PCDH8-201ENST00000338862 C14orf37Q86TY3 774 aa17.46■□□□□ 0.39
PCDH8-201ENST00000338862 PKNOX2Q96KN3 472 aa17.46■□□□□ 0.39
PCDH8-201ENST00000338862 SHANK2Q9UPX8 1470 aa17.46■□□□□ 0.39
PCDH8-201ENST00000338862 NINLQ9Y2I6 1382 aa17.45■□□□□ 0.38
PCDH8-201ENST00000338862 SKOR2Q2VWA4 1001 aaPredicted RBP17.45■□□□□ 0.38
PCDH8-201ENST00000338862 RAPGEF3O95398 923 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms