RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 MARCH6O60337 910 aa11.65□□□□□ -0.54
COL12A1-201ENST00000322507 SUPT6HQ7KZ85 1726 aaKnown RBP11.65□□□□□ -0.54
COL12A1-201ENST00000322507 CCDC173Q0VFZ6 552 aa11.65□□□□□ -0.54
COL12A1-201ENST00000322507 ANKRD18AQ8IVF6 992 aa11.65□□□□□ -0.54
COL12A1-201ENST00000322507 HOMER1Q86YM7 354 aa11.65□□□□□ -0.55
COL12A1-201ENST00000322507 RNF168Q8IYW5 571 aaPredicted RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 ZNF592Q92610 1267 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 SH3BGRP55822 239 aaPredicted RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 USP47Q96K76 1375 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 DDX58O95786 925 aaKnown RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 CNTLNQ9NXG0 1405 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 AEBP2Q6ZN18 517 aaPredicted RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 SLC26A8Q96RN1 970 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 TCEAL9Q9UHQ7 104 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 API5Q9BZZ5 524 aaKnown RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 RRBP1Q9P2E9 1410 aaKnown RBP11.64□□□□□ -0.55
COL12A1-201ENST00000322507 C1orf141Q5JVX7 400 aa11.64□□□□□ -0.55
COL12A1-201ENST00000322507 ERICH3Q5RHP9 1530 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 LETM1O95202 739 aaPredicted RBP11.63□□□□□ -0.55
COL12A1-201ENST00000322507 GOLGA6L9A6NEM1 432 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 APBB1O00213 710 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 DDX49Q9Y6V7 483 aaKnown RBP11.63□□□□□ -0.55
COL12A1-201ENST00000322507 CCAR1Q8IX12 1150 aaKnown RBP11.63□□□□□ -0.55
COL12A1-201ENST00000322507 COG3Q96JB2 828 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 TRDNQ13061 729 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 FEZ1Q99689 392 aa11.63□□□□□ -0.55
COL12A1-201ENST00000322507 CT47A1Q5JQC4 288 aaPredicted RBP11.62□□□□□ -0.55
COL12A1-201ENST00000322507 NGDNQ8NEJ9 315 aaKnown RBP11.62□□□□□ -0.55
COL12A1-201ENST00000322507 NAP1L1P55209 391 aaKnown RBP11.62□□□□□ -0.55
COL12A1-201ENST00000322507 STK26Q9P289 416 aa11.62□□□□□ -0.55
COL12A1-201ENST00000322507 MCM2P49736 904 aa11.62□□□□□ -0.55
COL12A1-201ENST00000322507 CADPSQ9ULU8 1353 aa11.62□□□□□ -0.55
COL12A1-201ENST00000322507 ERC2O15083 957 aa11.62□□□□□ -0.55
COL12A1-201ENST00000322507 CCDC91Q7Z6B0 441 aa11.62□□□□□ -0.55
COL12A1-201ENST00000322507 FRAT2O75474 233 aaPredicted RBP11.62□□□□□ -0.55
COL12A1-201ENST00000322507 CT47B1P0C2W7 299 aaPredicted RBP11.61□□□□□ -0.55
COL12A1-201ENST00000322507 EFCAB5A4FU69 1503 aa11.61□□□□□ -0.55
COL12A1-201ENST00000322507 ERLIN1O75477 346 aa11.61□□□□□ -0.55
COL12A1-201ENST00000322507 MICALCLQ6ZW33 695 aa11.61□□□□□ -0.55
COL12A1-201ENST00000322507 INTS3Q68E01 1043 aaKnown RBP11.61□□□□□ -0.55
COL12A1-201ENST00000322507 ERLIN2O94905 339 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 HMGB2P26583 209 aaKnown RBP11.6□□□□□ -0.55
COL12A1-201ENST00000322507 GTF2E1P29083 439 aaPredicted RBP11.6□□□□□ -0.55
COL12A1-201ENST00000322507 TIGD1Q96MW7 591 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 RRP1P56182 461 aaKnown RBP11.6□□□□□ -0.55
COL12A1-201ENST00000322507 TXLNBQ8N3L3 684 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 PPM1EQ8WY54 764 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 SAFBQ15424 915 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL12A1-201ENST00000322507 PDCL3Q9H2J4 239 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 PDCP20941 246 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 CCDC7Q96M83 1385 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
COL12A1-201ENST00000322507 MAPK8IP2Q13387 824 aaPredicted RBP11.6□□□□□ -0.55
COL12A1-201ENST00000322507 CPLX1O14810 134 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 L3MBTL2Q969R5 705 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 FAM184BQ9ULE4 1060 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 SLC4A10Q6U841 1118 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 SOX12O15370 315 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 CHMP5Q9NZZ3 219 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 SAFB2Q14151 953 aaKnown RBP eCLIP11.59□□□□□ -0.55
COL12A1-201ENST00000322507 IQCEQ6IPM2 695 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 KIF3CO14782 793 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 KIF3BO15066 747 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 XBP1P17861 261 aa11.59□□□□□ -0.55
COL12A1-201ENST00000322507 ERICH2A1L162 156 aa11.58□□□□□ -0.55
COL12A1-201ENST00000322507 DAAM2Q86T65 1068 aa11.58□□□□□ -0.55
COL12A1-201ENST00000322507 TRIM34Q9BYJ4 488 aa11.58□□□□□ -0.55
COL12A1-201ENST00000322507 BRMS1Q9HCU9 246 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 TTC5Q8N0Z6 440 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 HIP1O00291 1037 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 MRE11P49959 708 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-201ENST00000322507 GOLIM4O00461 696 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 PIP4K2AP48426 406 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-201ENST00000322507 ZNHIT6Q9NWK9 470 aaKnown RBP11.58□□□□□ -0.56
COL12A1-201ENST00000322507 FAM193AP78312 1265 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 PAXIP1Q6ZW49 1069 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-201ENST00000322507 TEFQ10587 303 aa11.58□□□□□ -0.56
COL12A1-201ENST00000322507 C9orf78Q9NZ63 289 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-201ENST00000322507 MBD3O95983 291 aa11.57□□□□□ -0.56
COL12A1-201ENST00000322507 ZBTB17Q13105 803 aa11.57□□□□□ -0.56
COL12A1-201ENST00000322507 IFT57Q9NWB7 429 aa11.57□□□□□ -0.56
COL12A1-201ENST00000322507 CEP63Q96MT8 703 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 HECW1Q76N89 1606 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.56□□□□□ -0.56
COL12A1-201ENST00000322507 V9GYY5 206 aaPredicted RBP11.56□□□□□ -0.56
COL12A1-201ENST00000322507 PSMA5P28066 241 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 SMC1AQ14683 1233 aaKnown RBP11.56□□□□□ -0.56
COL12A1-201ENST00000322507 PDE4AP27815 886 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 PLEKHH2Q8IVE3 1493 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 VPS53Q5VIR6 699 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 CCDC73Q6ZRK6 1079 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 TSHZ2Q9NRE2 1034 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 FHOD3Q2V2M9 1422 aa11.56□□□□□ -0.56
COL12A1-201ENST00000322507 ANKRD45Q5TZF3 282 aa11.55□□□□□ -0.56
COL12A1-201ENST00000322507 TOMM22Q9NS69 142 aa11.55□□□□□ -0.56
COL12A1-201ENST00000322507 ZNF330Q9Y3S2 320 aaPredicted RBP11.55□□□□□ -0.56
COL12A1-201ENST00000322507 DHX16O60231 1041 aaKnown RBP11.55□□□□□ -0.56
COL12A1-201ENST00000322507 GNAI1P63096 354 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms