RNA–Protein interactions for RNA: ENST00000321105.9

TOP3A-201, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,056 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-201ENST00000321105 PER1O15534 1290 aaPredicted RBP13.84□□□□□ -0.19
TOP3A-201ENST00000321105 NUDT16Q96DE0 195 aaKnown RBP13.84□□□□□ -0.19
TOP3A-201ENST00000321105 C14orf93Q9H972 538 aaKnown RBP13.84□□□□□ -0.19
TOP3A-201ENST00000321105 PRAG1Q86YV5 1406 aa13.84□□□□□ -0.19
TOP3A-201ENST00000321105 CASC1Q6TDU7 716 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 ZRANB1Q9UGI0 708 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 TRIM6-TRIM34B2RNG4 842 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 KCNJ4P48050 445 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 SMG6Q86US8 1419 aaKnown RBP13.83□□□□□ -0.2
TOP3A-201ENST00000321105 SLFN5Q08AF3 891 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 HSCBQ8IWL3 235 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 KDM5BQ9UGL1 1544 aa13.83□□□□□ -0.2
TOP3A-201ENST00000321105 LMOD3Q0VAK6 560 aa13.82□□□□□ -0.2
TOP3A-201ENST00000321105 CHMP4BQ9H444 224 aaKnown RBP13.82□□□□□ -0.2
TOP3A-201ENST00000321105 USP35Q9P2H5 1018 aa13.82□□□□□ -0.2
TOP3A-201ENST00000321105 TSPYL4Q9UJ04 414 aa13.82□□□□□ -0.2
TOP3A-201ENST00000321105 NOB1Q9ULX3 412 aaKnown RBP13.82□□□□□ -0.2
TOP3A-201ENST00000321105 TEFQ10587 303 aa13.81□□□□□ -0.2
TOP3A-201ENST00000321105 FKBP5Q13451 457 aaPredicted RBP13.81□□□□□ -0.2
TOP3A-201ENST00000321105 CHMP3Q9Y3E7 222 aa13.81□□□□□ -0.2
TOP3A-201ENST00000321105 CCDC61Q9Y6R9 512 aa13.81□□□□□ -0.2
TOP3A-201ENST00000321105 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
TOP3A-201ENST00000321105 FOXD4L5Q5VV16 416 aaPredicted RBP13.8□□□□□ -0.2
TOP3A-201ENST00000321105 FOXD4L4Q8WXT5 416 aaPredicted RBP13.8□□□□□ -0.2
TOP3A-201ENST00000321105 DUSP27Q5VZP5 1158 aa13.8□□□□□ -0.2
TOP3A-201ENST00000321105 NAP1L2Q9ULW6 460 aaPredicted RBP13.8□□□□□ -0.2
TOP3A-201ENST00000321105 TMPOP42166 694 aaKnown RBP13.8□□□□□ -0.2
TOP3A-201ENST00000321105 ANP32BQ92688 251 aaKnown RBP13.79□□□□□ -0.2
TOP3A-201ENST00000321105 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
TOP3A-201ENST00000321105 MCM10Q7L590 875 aa13.79□□□□□ -0.2
TOP3A-201ENST00000321105 DDX19BQ9UMR2 479 aa13.79□□□□□ -0.2
TOP3A-201ENST00000321105 RPGRIP1LQ68CZ1 1315 aa13.78□□□□□ -0.2
TOP3A-201ENST00000321105 DENND4BO75064 1496 aaPredicted RBP13.78□□□□□ -0.2
TOP3A-201ENST00000321105 TEX14Q8IWB6 1497 aa13.78□□□□□ -0.2
TOP3A-201ENST00000321105 WDR7Q9Y4E6 1490 aa13.78□□□□□ -0.2
TOP3A-201ENST00000321105 FOXD4L6Q3SYB3 417 aaPredicted RBP13.78□□□□□ -0.2
TOP3A-201ENST00000321105 FOXD4L3Q6VB84 417 aaPredicted RBP13.78□□□□□ -0.2
TOP3A-201ENST00000321105 TNNQ9UQP3 1299 aa13.78□□□□□ -0.2
TOP3A-201ENST00000321105 FAM83GA6ND36 823 aa13.77□□□□□ -0.2
TOP3A-201ENST00000321105 MSH5O43196 834 aa13.77□□□□□ -0.2
TOP3A-201ENST00000321105 TWISTNBQ3B726 338 aaPredicted RBP13.77□□□□□ -0.21
TOP3A-201ENST00000321105 USHBP1Q8N6Y0 703 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 RILPL2Q969X0 211 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 NLRP2Q9NX02 1062 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 SCAF11Q99590 1463 aaKnown RBP13.77□□□□□ -0.21
TOP3A-201ENST00000321105 GNAI1P63096 354 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 AIMP1Q12904 312 aaKnown RBP13.77□□□□□ -0.21
TOP3A-201ENST00000321105 PDZRN3Q9UPQ7 1066 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 FANCIQ9NVI1 1328 aa13.77□□□□□ -0.21
TOP3A-201ENST00000321105 DNMT1P26358 1616 aaKnown RBP13.76□□□□□ -0.21
TOP3A-201ENST00000321105 RALGAPBQ86X10 1494 aa13.76□□□□□ -0.21
TOP3A-201ENST00000321105 THEMISQ8N1K5 641 aaPredicted RBP13.75□□□□□ -0.21
TOP3A-201ENST00000321105 FYB1O15117 783 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 SSH1Q8WYL5 1049 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 DMRT2Q9Y5R5 561 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 PROSER2Q86WR7 435 aaPredicted RBP13.75□□□□□ -0.21
TOP3A-201ENST00000321105 AMOTL2Q9Y2J4 779 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 A2MP01023 1474 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 ERCC6L2Q5T890 1561 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 FOXO3O43524 673 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 FGD1P98174 961 aa13.75□□□□□ -0.21
TOP3A-201ENST00000321105 ZC3H6P61129 1189 aaKnown RBP13.74□□□□□ -0.21
TOP3A-201ENST00000321105 C1orf141Q5JVX7 400 aa13.74□□□□□ -0.21
TOP3A-201ENST00000321105 MBD5Q9P267 1494 aa13.74□□□□□ -0.21
TOP3A-201ENST00000321105 GOLGA6L22H0YM25 854 aa13.74□□□□□ -0.21
TOP3A-201ENST00000321105 PLCB2Q00722 1185 aa13.74□□□□□ -0.21
TOP3A-201ENST00000321105 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
TOP3A-201ENST00000321105 RARSP54136 660 aaKnown RBP13.73□□□□□ -0.21
TOP3A-201ENST00000321105 WASLO00401 505 aaPredicted RBP13.72□□□□□ -0.21
TOP3A-201ENST00000321105 NPHP1O15259 732 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 ABCC2Q92887 1545 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 BACH2Q9BYV9 841 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 DUOX2Q9NRD8 1548 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 TMEM57Q8N5G2 664 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 ITSN2Q9NZM3 1697 aa13.72□□□□□ -0.21
TOP3A-201ENST00000321105 SYTL4Q96C24 671 aaPredicted RBP13.71□□□□□ -0.21
TOP3A-201ENST00000321105 HMMRO75330 724 aa13.71□□□□□ -0.21
TOP3A-201ENST00000321105 ATF7IPQ6VMQ6 1270 aa13.71□□□□□ -0.21
TOP3A-201ENST00000321105 PLEKHH1Q9ULM0 1364 aa13.71□□□□□ -0.21
TOP3A-201ENST00000321105 KIF16BQ96L93 1317 aa13.71□□□□□ -0.22
TOP3A-201ENST00000321105 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.22
TOP3A-201ENST00000321105 ABCC10Q5T3U5 1492 aa13.7□□□□□ -0.22
TOP3A-201ENST00000321105 HSP90AB2PQ58FF8 381 aa13.7□□□□□ -0.22
TOP3A-201ENST00000321105 PDE3AQ14432 1141 aa13.7□□□□□ -0.22
TOP3A-201ENST00000321105 PARD3Q8TEW0 1356 aa13.7□□□□□ -0.22
TOP3A-201ENST00000321105 ATF3P18847 181 aa13.69□□□□□ -0.22
TOP3A-201ENST00000321105 API5Q9BZZ5 524 aaKnown RBP13.69□□□□□ -0.22
TOP3A-201ENST00000321105 AEBP1Q8IUX7 1158 aa13.69□□□□□ -0.22
TOP3A-201ENST00000321105 WDR63Q8IWG1 891 aa13.69□□□□□ -0.22
TOP3A-201ENST00000321105 IGHDP01880 384 aa13.69□□□□□ -0.22
TOP3A-201ENST00000321105 C9orf78Q9NZ63 289 aaPredicted RBP13.69□□□□□ -0.22
TOP3A-201ENST00000321105 ZNF692Q9BU19 519 aaPredicted RBP13.68□□□□□ -0.22
TOP3A-201ENST00000321105 SPATA31E1Q6ZUB1 1445 aa13.68□□□□□ -0.22
TOP3A-201ENST00000321105 FCHSD2O94868 740 aa13.68□□□□□ -0.22
TOP3A-201ENST00000321105 EVA1CP58658 441 aa13.68□□□□□ -0.22
TOP3A-201ENST00000321105 MVPQ14764 893 aaKnown RBP13.67□□□□□ -0.22
TOP3A-201ENST00000321105 KIAA1211Q6ZU35 1233 aa13.67□□□□□ -0.22
TOP3A-201ENST00000321105 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.67□□□□□ -0.22
TOP3A-201ENST00000321105 F6X3S4 739 aa13.67□□□□□ -0.22
TOP3A-201ENST00000321105 ANKLE2Q86XL3 938 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms