RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 METP08581 1390 aa21.15■□□□□ 0.98
USH1C-202ENST00000318024 MINK1Q8N4C8 1332 aaPredicted RBP21.15■□□□□ 0.98
USH1C-202ENST00000318024 RIMS1Q86UR5 1692 aaKnown RBP21.15■□□□□ 0.98
USH1C-202ENST00000318024 WAPLQ7Z5K2 1190 aa21.15■□□□□ 0.98
USH1C-202ENST00000318024 MYO3AQ8NEV4 1616 aa21.15■□□□□ 0.98
USH1C-202ENST00000318024 TMC1Q8TDI8 760 aa21.14■□□□□ 0.98
USH1C-202ENST00000318024 THEMISQ8N1K5 641 aaPredicted RBP21.13■□□□□ 0.97
USH1C-202ENST00000318024 CABP2Q9NPB3 220 aa21.13■□□□□ 0.97
USH1C-202ENST00000318024 EID1Q9Y6B2 187 aa21.13■□□□□ 0.97
USH1C-202ENST00000318024 QRICH2Q9H0J4 1663 aa21.13■□□□□ 0.97
USH1C-202ENST00000318024 SLC26A8Q96RN1 970 aa21.13■□□□□ 0.97
USH1C-202ENST00000318024 SLC12A5Q9H2X9 1139 aa21.12■□□□□ 0.97
USH1C-202ENST00000318024 KNSTRNQ9Y448 316 aa21.12■□□□□ 0.97
USH1C-202ENST00000318024 ARHGEF28Q8N1W1 1705 aaKnown RBP21.12■□□□□ 0.97
USH1C-202ENST00000318024 NBR1Q14596 966 aa21.12■□□□□ 0.97
USH1C-202ENST00000318024 EVC2Q86UK5 1308 aa21.11■□□□□ 0.97
USH1C-202ENST00000318024 KTN1Q86UP2 1357 aaKnown RBP21.1■□□□□ 0.97
USH1C-202ENST00000318024 NRXN3Q9Y4C0 1643 aa21.1■□□□□ 0.97
USH1C-202ENST00000318024 ANP32AP39687 249 aaKnown RBP21.1■□□□□ 0.97
USH1C-202ENST00000318024 KDM5AP29375 1690 aaKnown RBP21.09■□□□□ 0.97
USH1C-202ENST00000318024 PLEKHH1Q9ULM0 1364 aa21.09■□□□□ 0.97
USH1C-202ENST00000318024 SRPK2P78362 688 aaKnown RBP21.09■□□□□ 0.97
USH1C-202ENST00000318024 RALBP1Q15311 655 aa21.09■□□□□ 0.97
USH1C-202ENST00000318024 ADAMTSL3P82987 1691 aa21.08■□□□□ 0.96
USH1C-202ENST00000318024 CARD14Q9BXL6 1004 aa21.08■□□□□ 0.96
USH1C-202ENST00000318024 BRD4O60885 1362 aaPredicted RBP21.06■□□□□ 0.96
USH1C-202ENST00000318024 PLEKHG1Q9ULL1 1385 aa21.06■□□□□ 0.96
USH1C-202ENST00000318024 TULP4Q9NRJ4 1543 aa21.06■□□□□ 0.96
USH1C-202ENST00000318024 MYBBP1AQ9BQG0 1328 aaKnown RBP21.05■□□□□ 0.96
USH1C-202ENST00000318024 ABCC11Q96J66 1382 aa21.05■□□□□ 0.96
USH1C-202ENST00000318024 ADAMTS13Q76LX8 1427 aa21.05■□□□□ 0.96
USH1C-202ENST00000318024 MYOM1P52179 1685 aa21.05■□□□□ 0.96
USH1C-202ENST00000318024 AMER1Q5JTC6 1135 aaPredicted RBP21.05■□□□□ 0.96
USH1C-202ENST00000318024 SETD1AO15047 1707 aaKnown RBP21.05■□□□□ 0.96
USH1C-202ENST00000318024 PARD3Q8TEW0 1356 aa21.04■□□□□ 0.96
USH1C-202ENST00000318024 ZBTB47Q9UFB7 747 aaPredicted RBP21.04■□□□□ 0.96
USH1C-202ENST00000318024 CDK19Q9BWU1 502 aa21.03■□□□□ 0.96
USH1C-202ENST00000318024 SLIT1O75093 1534 aa21.02■□□□□ 0.96
USH1C-202ENST00000318024 ARHGAP23Q9P227 1491 aa21.02■□□□□ 0.96
USH1C-202ENST00000318024 RRP1P56182 461 aaKnown RBP21.01■□□□□ 0.95
USH1C-202ENST00000318024 CEP170BQ9Y4F5 1589 aaPredicted RBP21.01■□□□□ 0.95
USH1C-202ENST00000318024 NLRP13Q86W25 1043 aa20.98■□□□□ 0.95
USH1C-202ENST00000318024 SENP3-EIF4A1A0A087X0R7 540 aa20.97■□□□□ 0.95
USH1C-202ENST00000318024 PUS7Q96PZ0 661 aaKnown RBP20.97■□□□□ 0.95
USH1C-202ENST00000318024 ROBO2Q9HCK4 1378 aa20.97■□□□□ 0.95
USH1C-202ENST00000318024 TCERG1O14776 1098 aaKnown RBP20.97■□□□□ 0.95
USH1C-202ENST00000318024 AMOTL2Q9Y2J4 779 aa20.97■□□□□ 0.95
USH1C-202ENST00000318024 DLC1Q96QB1 1528 aa20.97■□□□□ 0.95
USH1C-202ENST00000318024 ANKLE2Q86XL3 938 aa20.96■□□□□ 0.95
USH1C-202ENST00000318024 EXOC6Q8TAG9 804 aa20.96■□□□□ 0.95
USH1C-202ENST00000318024 TBX22Q9Y458 520 aa20.96■□□□□ 0.95
USH1C-202ENST00000318024 PTPRUQ92729 1446 aa20.95■□□□□ 0.95
USH1C-202ENST00000318024 NSD3Q9BZ95 1437 aa20.95■□□□□ 0.95
USH1C-202ENST00000318024 CABP1Q9NZU7 370 aa20.95■□□□□ 0.94
USH1C-202ENST00000318024 MED14O60244 1454 aa20.94■□□□□ 0.94
USH1C-202ENST00000318024 WASLO00401 505 aaPredicted RBP20.93■□□□□ 0.94
USH1C-202ENST00000318024 PPP2R1AP30153 589 aa20.93■□□□□ 0.94
USH1C-202ENST00000318024 SIRT1Q96EB6 747 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 BACH2Q9BYV9 841 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 RCAN3Q9UKA8 241 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 TECPR2O15040 1411 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 MS4A1P11836 297 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 RTL5Q5HYW3 569 aaPredicted RBP20.92■□□□□ 0.94
USH1C-202ENST00000318024 NCKAP5LQ9HCH0 1330 aa20.92■□□□□ 0.94
USH1C-202ENST00000318024 ATAD2Q6PL18 1390 aa20.91■□□□□ 0.94
USH1C-202ENST00000318024 PDE4AP27815 886 aa20.91■□□□□ 0.94
USH1C-202ENST00000318024 TNNT2P45379 298 aaPredicted RBP20.91■□□□□ 0.94
USH1C-202ENST00000318024 FAM135BQ49AJ0 1406 aa20.91■□□□□ 0.94
USH1C-202ENST00000318024 NUTM2FA1L443 756 aa20.9■□□□□ 0.94
USH1C-202ENST00000318024 PDE3BQ13370 1112 aa20.9■□□□□ 0.94
USH1C-202ENST00000318024 ANKRD36BQ8N2N9 1353 aa20.9■□□□□ 0.94
USH1C-202ENST00000318024 SETD1BQ9UPS6 1966 aaKnown RBP20.89■□□□□ 0.94
USH1C-202ENST00000318024 A0A1W2PP64 1363 aa20.89■□□□□ 0.94
USH1C-202ENST00000318024 INSRP06213 1382 aa20.88■□□□□ 0.93
USH1C-202ENST00000318024 NPC1L1Q9UHC9 1359 aa20.88■□□□□ 0.93
USH1C-202ENST00000318024 KCNA6P17658 529 aa20.87■□□□□ 0.93
USH1C-202ENST00000318024 TERF2IPQ9NYB0 399 aa20.87■□□□□ 0.93
USH1C-202ENST00000318024 CGNL1Q0VF96 1302 aa20.87■□□□□ 0.93
USH1C-202ENST00000318024 CPS1P31327 1500 aa20.86■□□□□ 0.93
USH1C-202ENST00000318024 MORC1Q86VD1 984 aa20.86■□□□□ 0.93
USH1C-202ENST00000318024 NUDT16Q96DE0 195 aaKnown RBP20.86■□□□□ 0.93
USH1C-202ENST00000318024 USP35Q9P2H5 1018 aa20.85■□□□□ 0.93
USH1C-202ENST00000318024 RBM33Q96EV2 1170 aaKnown RBP20.85■□□□□ 0.93
USH1C-202ENST00000318024 HDGFL2Q7Z4V5 671 aaPredicted RBP20.84■□□□□ 0.93
USH1C-202ENST00000318024 NINLQ9Y2I6 1382 aa20.84■□□□□ 0.93
USH1C-202ENST00000318024 KNDC1Q76NI1 1749 aa20.84■□□□□ 0.93
USH1C-202ENST00000318024 CD163L1Q9NR16 1453 aa20.83■□□□□ 0.93
USH1C-202ENST00000318024 ZNF142P52746 1687 aaPredicted RBP20.83■□□□□ 0.93
USH1C-202ENST00000318024 GGNBP2Q9H3C7 697 aa20.82■□□□□ 0.92
USH1C-202ENST00000318024 BLMP54132 1417 aaPredicted RBP20.82■□□□□ 0.92
USH1C-202ENST00000318024 KDM4FA0A1W2PPD8 638 aa20.82■□□□□ 0.92
USH1C-202ENST00000318024 PRR36Q9H6K5 1346 aa20.82■□□□□ 0.92
USH1C-202ENST00000318024 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.81■□□□□ 0.92
USH1C-202ENST00000318024 CCDC61Q9Y6R9 512 aa20.81■□□□□ 0.92
USH1C-202ENST00000318024 PPIP5K1Q6PFW1 1433 aa20.8■□□□□ 0.92
USH1C-202ENST00000318024 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.8■□□□□ 0.92
USH1C-202ENST00000318024 FYB1O15117 783 aa20.79■□□□□ 0.92
USH1C-202ENST00000318024 NPM2Q86SE8 214 aaKnown RBP20.79■□□□□ 0.92
USH1C-202ENST00000318024 CDCA7LQ96GN5 454 aa20.79■□□□□ 0.92
USH1C-202ENST00000318024 SALL2Q9Y467 1007 aaPredicted RBP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms