RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 FRAT2O75474 233 aaPredicted RBP24.59■■□□□ 1.53
RTN4-201ENST00000317610 PANK1Q8TE04 598 aa24.58■■□□□ 1.53
RTN4-201ENST00000317610 NSD3Q9BZ95 1437 aa24.58■■□□□ 1.53
RTN4-201ENST00000317610 COG6Q9Y2V7 657 aa24.58■■□□□ 1.53
RTN4-201ENST00000317610 RUNDC1Q96C34 613 aa24.57■■□□□ 1.52
RTN4-201ENST00000317610 RTN4Q9NQC3 1192 aaKnown RBP24.57■■□□□ 1.52
RTN4-201ENST00000317610 BRPF3Q9ULD4 1205 aa24.57■■□□□ 1.52
RTN4-201ENST00000317610 QRICH2Q9H0J4 1663 aa24.56■■□□□ 1.52
RTN4-201ENST00000317610 CANXP27824 592 aaKnown RBP24.56■■□□□ 1.52
RTN4-201ENST00000317610 RARSP54136 660 aaKnown RBP24.55■■□□□ 1.52
RTN4-201ENST00000317610 ADGRL1O94910 1474 aa24.55■■□□□ 1.52
RTN4-201ENST00000317610 WDR63Q8IWG1 891 aa24.54■■□□□ 1.52
RTN4-201ENST00000317610 PMFBP1Q8TBY8 1022 aa24.54■■□□□ 1.52
RTN4-201ENST00000317610 PPLO60437 1756 aa24.54■■□□□ 1.52
RTN4-201ENST00000317610 NCBP3Q53F19 620 aaKnown RBP24.53■■□□□ 1.52
RTN4-201ENST00000317610 MORC1Q86VD1 984 aa24.53■■□□□ 1.52
RTN4-201ENST00000317610 NOS1P29475 1434 aa24.53■■□□□ 1.52
RTN4-201ENST00000317610 SEC24BO95487 1268 aa24.52■■□□□ 1.52
RTN4-201ENST00000317610 ADGRB1O14514 1584 aa24.52■■□□□ 1.52
RTN4-201ENST00000317610 ZNF518AQ6AHZ1 1483 aa24.52■■□□□ 1.52
RTN4-201ENST00000317610 KIDINS220Q9ULH0 1771 aa24.52■■□□□ 1.52
RTN4-201ENST00000317610 CCDC27Q2M243 656 aa24.52■■□□□ 1.52
RTN4-201ENST00000317610 TCP11L2Q8N4U5 519 aa24.5■■□□□ 1.51
RTN4-201ENST00000317610 ANO8Q9HCE9 1232 aaPredicted RBP24.5■■□□□ 1.51
RTN4-201ENST00000317610 BECN1Q14457 450 aa24.5■■□□□ 1.51
RTN4-201ENST00000317610 C14orf93Q9H972 538 aaKnown RBP24.47■■□□□ 1.51
RTN4-201ENST00000317610 PCDHB15Q9Y5E8 787 aa24.47■■□□□ 1.51
RTN4-201ENST00000317610 RLBP1P12271 317 aa24.46■■□□□ 1.51
RTN4-201ENST00000317610 SLC12A5Q9H2X9 1139 aa24.46■■□□□ 1.51
RTN4-201ENST00000317610 RRP7AQ9Y3A4 280 aaKnown RBP24.45■■□□□ 1.51
RTN4-201ENST00000317610 ADGRB2O60241 1585 aa24.45■■□□□ 1.5
RTN4-201ENST00000317610 NEUROD2Q15784 382 aa24.43■■□□□ 1.5
RTN4-201ENST00000317610 PUS7Q96PZ0 661 aaKnown RBP24.43■■□□□ 1.5
RTN4-201ENST00000317610 TBC1D32Q96NH3 1257 aa24.43■■□□□ 1.5
RTN4-201ENST00000317610 PDZRN3Q9UPQ7 1066 aa24.42■■□□□ 1.5
RTN4-201ENST00000317610 TRAK1Q9UPV9 953 aa24.42■■□□□ 1.5
RTN4-201ENST00000317610 NSD2O96028 1365 aa24.42■■□□□ 1.5
RTN4-201ENST00000317610 CFAP53Q96M91 514 aa24.41■■□□□ 1.5
RTN4-201ENST00000317610 ANTXR1Q9H6X2 564 aa24.41■■□□□ 1.5
RTN4-201ENST00000317610 TNNQ9UQP3 1299 aa24.41■■□□□ 1.5
RTN4-201ENST00000317610 MTHFSP49914 203 aa24.41■■□□□ 1.5
RTN4-201ENST00000317610 RWDD1Q9H446 243 aaPredicted RBP24.4■■□□□ 1.5
RTN4-201ENST00000317610 TNNT2P45379 298 aaPredicted RBP24.4■■□□□ 1.5
RTN4-201ENST00000317610 MYH16Q9H6N6 1097 aa24.4■■□□□ 1.5
RTN4-201ENST00000317610 NPATQ14207 1427 aa24.4■■□□□ 1.5
RTN4-201ENST00000317610 RPGRIP1LQ68CZ1 1315 aa24.39■■□□□ 1.49
RTN4-201ENST00000317610 UPF2Q9HAU5 1272 aaKnown RBP24.39■■□□□ 1.49
RTN4-201ENST00000317610 ARHGEF28Q8N1W1 1705 aaKnown RBP24.37■■□□□ 1.49
RTN4-201ENST00000317610 ANKRD36BQ8N2N9 1353 aa24.37■■□□□ 1.49
RTN4-201ENST00000317610 GLI2P10070 1586 aa24.37■■□□□ 1.49
RTN4-201ENST00000317610 MVPQ14764 893 aaKnown RBP24.36■■□□□ 1.49
RTN4-201ENST00000317610 TULP4Q9NRJ4 1543 aa24.36■■□□□ 1.49
RTN4-201ENST00000317610 CT47B1P0C2W7 299 aaPredicted RBP24.36■■□□□ 1.49
RTN4-201ENST00000317610 BCL2L13Q9BXK5 485 aa24.35■■□□□ 1.49
RTN4-201ENST00000317610 HECW2Q9P2P5 1572 aa24.35■■□□□ 1.49
RTN4-201ENST00000317610 FRMPD1Q5SYB0 1578 aa24.34■■□□□ 1.49
RTN4-201ENST00000317610 CHGAP10645 457 aaKnown RBP24.33■■□□□ 1.48
RTN4-201ENST00000317610 TBC1D2Q9BYX2 928 aa24.33■■□□□ 1.48
RTN4-201ENST00000317610 POGKQ9P215 609 aa24.33■■□□□ 1.48
RTN4-201ENST00000317610 ZKSCAN2Q63HK3 967 aa24.32■■□□□ 1.48
RTN4-201ENST00000317610 SLKQ9H2G2 1235 aaPredicted RBP24.32■■□□□ 1.48
RTN4-201ENST00000317610 TMEM132EQ6IEE7 984 aa24.32■■□□□ 1.48
RTN4-201ENST00000317610 ASXL2Q76L83 1435 aa24.31■■□□□ 1.48
RTN4-201ENST00000317610 EVC2Q86UK5 1308 aa24.31■■□□□ 1.48
RTN4-201ENST00000317610 FAM43AQ8N2R8 423 aa24.3■■□□□ 1.48
RTN4-201ENST00000317610 CFAP65Q6ZU64 1925 aaKnown RBP24.3■■□□□ 1.48
RTN4-201ENST00000317610 PIK3C2BO00750 1634 aa24.3■■□□□ 1.48
RTN4-201ENST00000317610 DZIP1LQ8IYY4 767 aaKnown RBP24.29■■□□□ 1.48
RTN4-201ENST00000317610 CAMSAP1Q5T5Y3 1602 aa24.29■■□□□ 1.48
RTN4-201ENST00000317610 U2AF1L5P0DN76 240 aaPredicted RBP24.28■■□□□ 1.48
RTN4-201ENST00000317610 U2AF1Q01081 240 aaKnown RBP eCLIP24.28■■□□□ 1.484e-6■□□□□ 9.4
RTN4-201ENST00000317610 ABCC3O15438 1527 aa24.28■■□□□ 1.48
RTN4-201ENST00000317610 MLH3Q9UHC1 1453 aa24.28■■□□□ 1.48
RTN4-201ENST00000317610 NEXMIFQ5QGS0 1516 aa24.27■■□□□ 1.48
RTN4-201ENST00000317610 HDAC1Q13547 482 aaPredicted RBP24.27■■□□□ 1.48
RTN4-201ENST00000317610 COL3A1P02461 1466 aaPredicted RBP24.27■■□□□ 1.48
RTN4-201ENST00000317610 CFAP74Q9C0B2 1584 aa24.26■■□□□ 1.47
RTN4-201ENST00000317610 CD109Q6YHK3 1445 aa24.25■■□□□ 1.47
RTN4-201ENST00000317610 POGZQ7Z3K3 1410 aa24.25■■□□□ 1.47
RTN4-201ENST00000317610 ABCC11Q96J66 1382 aa24.25■■□□□ 1.47
RTN4-201ENST00000317610 FTSJ3Q8IY81 847 aaKnown RBP24.25■■□□□ 1.47
RTN4-201ENST00000317610 PLEKHF1Q96S99 279 aa24.25■■□□□ 1.47
RTN4-201ENST00000317610 SIGLEC1Q9BZZ2 1709 aa24.25■■□□□ 1.47
RTN4-201ENST00000317610 ANKRD26Q9UPS8 1709 aa24.24■■□□□ 1.47
RTN4-201ENST00000317610 L1TD1Q5T7N2 865 aaKnown RBP24.23■■□□□ 1.47
RTN4-201ENST00000317610 IL16Q14005 1332 aa24.22■■□□□ 1.47
RTN4-201ENST00000317610 TRIM27P14373 513 aa24.21■■□□□ 1.47
RTN4-201ENST00000317610 TSR2Q969E8 191 aaKnown RBP24.21■■□□□ 1.47
RTN4-201ENST00000317610 SMC4Q9NTJ3 1288 aa24.21■■□□□ 1.47
RTN4-201ENST00000317610 DDX19BQ9UMR2 479 aa24.21■■□□□ 1.47
RTN4-201ENST00000317610 TMPOP42166 694 aaKnown RBP24.2■■□□□ 1.46
RTN4-201ENST00000317610 EXOSC9Q06265 439 aaKnown RBP24.2■■□□□ 1.46
RTN4-201ENST00000317610 TRIM35Q9UPQ4 493 aa24.2■■□□□ 1.46
RTN4-201ENST00000317610 MED14O60244 1454 aa24.2■■□□□ 1.46
RTN4-201ENST00000317610 C22orf23Q9BZE7 217 aa24.19■■□□□ 1.46
RTN4-201ENST00000317610 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.19■■□□□ 1.46
RTN4-201ENST00000317610 A0A1W2PP64 1363 aa24.19■■□□□ 1.46
RTN4-201ENST00000317610 VGFO15240 615 aaPredicted RBP24.19■■□□□ 1.46
RTN4-201ENST00000317610 SMC5Q8IY18 1101 aa24.19■■□□□ 1.46
RTN4-201ENST00000317610 ATF7IPQ6VMQ6 1270 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms