RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 HOOK1Q9UJC3 728 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-201ENST00000313860 CDK5RAP3Q96JB5 506 aa9.15□□□□□ -0.95
LIMCH1-201ENST00000313860 NOL3O60936 208 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 DDX11Q96FC9 970 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 DDX49Q9Y6V7 483 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 SLC4A1P02730 911 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 NAA16Q6N069 864 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 MTERF4Q7Z6M4 381 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 GBP7Q8N8V2 638 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 CCDC6Q16204 474 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 CCDC102AQ96A19 550 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 FEZ1Q99689 392 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 EPS15P42566 896 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 UIMC1Q96RL1 719 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 PPP1R9BQ96SB3 815 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 BICDL2A1A5D9 508 aa9.14□□□□□ -0.95
LIMCH1-201ENST00000313860 SRPK2P78362 688 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 RBBP5Q15291 538 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 MNAT1P51948 309 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 MCTP1Q6DN14 999 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 SMC6Q96SB8 1091 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 TCERG1O14776 1098 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 RNF8O76064 485 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 PPP4R4Q6NUP7 873 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 LRRCC1Q9C099 1032 aa9.13□□□□□ -0.95
LIMCH1-201ENST00000313860 NASPP49321 788 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 LIMCH1Q9UPQ0 1083 aa9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 P3H3Q8IVL6 736 aa9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 KIAA1328Q86T90 577 aa9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 SATB2Q9UPW6 733 aa9.12□□□□□ -0.95
LIMCH1-201ENST00000313860 A0A1B0GUL7 405 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 VPS41P49754 854 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 CEP83Q9Y592 693 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 HSP90AB4PQ58FF6 505 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 PDCL2Q8N4E4 241 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 GMNNO75496 209 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 NBPF6Q5VWK0 638 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 NBPF4Q96M43 638 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 G3V3G9 751 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 GCOM1H8Y6P7 765 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 NEBLO76041 1014 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 CFAP58Q5T655 872 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 DCAF8Q5TAQ9 597 aa9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 CCDC47Q96A33 483 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 CCDC43Q96MW1 224 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-201ENST00000313860 TPD52P55327 224 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 IKQ13123 557 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 TRIM63Q969Q1 353 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 ANKRD18BA2A2Z9 1011 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 WWC2Q6AWC2 1192 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 ZNF777Q9ULD5 760 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 RABEP1Q15276 862 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 PRR16Q569H4 304 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 CHMP4BQ9H444 224 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 IKBKGQ9Y6K9 419 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 ATP2C2O75185 946 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 SYCP1Q15431 976 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 FBXO2Q9UK22 296 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 TMCO3Q6UWJ1 677 aa9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 ZNF330Q9Y3S2 320 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-201ENST00000313860 HSP90AA5PQ58FG0 334 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 NUB1Q9Y5A7 615 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 DDX12PQ92771 950 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 RMDN2Q96LZ7 410 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 KIF4AO95239 1232 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 BCL2L13Q9BXK5 485 aa9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 CTDP1Q9Y5B0 961 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-201ENST00000313860 STK10O94804 968 aaKnown RBP9.09□□□□□ -0.96
LIMCH1-201ENST00000313860 DNAAF4Q8WXU2 420 aa9.09□□□□□ -0.96
LIMCH1-201ENST00000313860 TMEM132AQ24JP5 1023 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 FAM184AQ8NB25 1140 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 STMN2Q93045 179 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 SAMD1Q6SPF0 538 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 ERC1Q8IUD2 1116 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 DDX27Q96GQ7 796 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 KDM2AQ9Y2K7 1162 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 PLEKHD1A6NEE1 506 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 RRP9O43818 475 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 ERLIN1O75477 346 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 CCDC181Q5TID7 509 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 TSHZ2Q9NRE2 1034 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 JAKMIP3Q5VZ66 844 aa9.08□□□□□ -0.96
LIMCH1-201ENST00000313860 FOSBP53539 338 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 TXLNBQ8N3L3 684 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 RNF20Q5VTR2 975 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 IQCGQ9H095 443 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 MYZAPP0CAP1 466 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 MAPK8IP3Q9UPT6 1336 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 DDX46Q7L014 1031 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 SATB1Q01826 763 aa9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 TSPYL2Q9H2G4 693 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-201ENST00000313860 NPM1P06748 294 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 ZFYP08048 801 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 CWC22Q9HCG8 908 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 SLC4A3P48751 1232 aa9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 V9GYY5 206 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 FILIP1LQ4L180 1135 aa9.06□□□□□ -0.96
LIMCH1-201ENST00000313860 BRPF1P55201 1214 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms