RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 LAMC1P11047 1609 aa17.38■□□□□ 0.37
SCFD1-201ENST00000311943 MINK1Q8N4C8 1332 aaPredicted RBP17.38■□□□□ 0.37
SCFD1-201ENST00000311943 FAM135BQ49AJ0 1406 aa17.37■□□□□ 0.37
SCFD1-201ENST00000311943 KNDC1Q76NI1 1749 aa17.37■□□□□ 0.37
SCFD1-201ENST00000311943 POGKQ9P215 609 aa17.35■□□□□ 0.37
SCFD1-201ENST00000311943 TONSLQ96HA7 1378 aa17.35■□□□□ 0.37
SCFD1-201ENST00000311943 XPCQ01831 940 aaPredicted RBP17.34■□□□□ 0.37
SCFD1-201ENST00000311943 C1orf167Q5SNV9 1468 aa17.34■□□□□ 0.37
SCFD1-201ENST00000311943 CCER1Q8TC90 406 aaPredicted RBP17.34■□□□□ 0.37
SCFD1-201ENST00000311943 ARHGEF28Q8N1W1 1705 aaKnown RBP17.32■□□□□ 0.36
SCFD1-201ENST00000311943 TRPM1Q7Z4N2 1603 aa17.32■□□□□ 0.36
SCFD1-201ENST00000311943 DCCP43146 1447 aa17.32■□□□□ 0.36
SCFD1-201ENST00000311943 ESCO1Q5FWF5 840 aa17.31■□□□□ 0.36
SCFD1-201ENST00000311943 STAC3Q96MF2 364 aa17.31■□□□□ 0.36
SCFD1-201ENST00000311943 RGPD8O14715 1765 aaPredicted RBP17.31■□□□□ 0.36
SCFD1-201ENST00000311943 PHLPP1O60346 1717 aa17.29■□□□□ 0.36
SCFD1-201ENST00000311943 DLC1Q96QB1 1528 aa17.29■□□□□ 0.36
SCFD1-201ENST00000311943 PRR36Q9H6K5 1346 aa17.29■□□□□ 0.36
SCFD1-201ENST00000311943 SIRT1Q96EB6 747 aa17.29■□□□□ 0.36
SCFD1-201ENST00000311943 CDC42BPGQ6DT37 1551 aa17.28■□□□□ 0.36
SCFD1-201ENST00000311943 FOXO3O43524 673 aa17.28■□□□□ 0.36
SCFD1-201ENST00000311943 ROCK2O75116 1388 aaKnown RBP17.28■□□□□ 0.36
SCFD1-201ENST00000311943 KIAA1210Q9ULL0 1709 aa17.28■□□□□ 0.36
SCFD1-201ENST00000311943 COL16A1Q07092 1604 aaPredicted RBP17.28■□□□□ 0.36
SCFD1-201ENST00000311943 PMFBP1Q8TBY8 1022 aa17.27■□□□□ 0.36
SCFD1-201ENST00000311943 USP32Q8NFA0 1604 aa17.26■□□□□ 0.35
SCFD1-201ENST00000311943 FMN2Q9NZ56 1722 aa17.26■□□□□ 0.35
SCFD1-201ENST00000311943 PLEKHG5O94827 1062 aa17.25■□□□□ 0.35
SCFD1-201ENST00000311943 WASLO00401 505 aaPredicted RBP17.23■□□□□ 0.35
SCFD1-201ENST00000311943 CARD11Q9BXL7 1154 aa17.23■□□□□ 0.35
SCFD1-201ENST00000311943 AHDC1Q5TGY3 1603 aaPredicted RBP17.23■□□□□ 0.35
SCFD1-201ENST00000311943 NHSL1Q5SYE7 1610 aa17.22■□□□□ 0.35
SCFD1-201ENST00000311943 CDK19Q9BWU1 502 aa17.22■□□□□ 0.35
SCFD1-201ENST00000311943 CABP2Q9NPB3 220 aa17.21■□□□□ 0.35
SCFD1-201ENST00000311943 DISP3Q9P2K9 1392 aa17.21■□□□□ 0.35
SCFD1-201ENST00000311943 CENPJQ9HC77 1338 aaPredicted RBP17.21■□□□□ 0.35
SCFD1-201ENST00000311943 MED1Q15648 1581 aaPredicted RBP17.2■□□□□ 0.34
SCFD1-201ENST00000311943 NUTM2BA6NNL0 878 aaPredicted RBP17.2■□□□□ 0.34
SCFD1-201ENST00000311943 NUTM2EB1AL46 878 aaPredicted RBP17.2■□□□□ 0.34
SCFD1-201ENST00000311943 NUTM2AQ8IVF1 878 aaPredicted RBP17.2■□□□□ 0.34
SCFD1-201ENST00000311943 ADGRB2O60241 1585 aa17.19■□□□□ 0.34
SCFD1-201ENST00000311943 RALGAPBQ86X10 1494 aa17.19■□□□□ 0.34
SCFD1-201ENST00000311943 LRP6O75581 1613 aa17.19■□□□□ 0.34
SCFD1-201ENST00000311943 QRICH2Q9H0J4 1663 aa17.19■□□□□ 0.34
SCFD1-201ENST00000311943 PHF8Q9UPP1 1060 aa17.18■□□□□ 0.34
SCFD1-201ENST00000311943 GPRASP1Q5JY77 1395 aa17.18■□□□□ 0.34
SCFD1-201ENST00000311943 SOS2Q07890 1332 aaPredicted RBP17.18■□□□□ 0.34
SCFD1-201ENST00000311943 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
SCFD1-201ENST00000311943 ILDR2Q71H61 639 aa17.17■□□□□ 0.34
SCFD1-201ENST00000311943 TULP4Q9NRJ4 1543 aa17.17■□□□□ 0.34
SCFD1-201ENST00000311943 PXDNQ92626 1479 aa17.17■□□□□ 0.34
SCFD1-201ENST00000311943 RGS17Q9UGC6 210 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-201ENST00000311943 ATP7BP35670 1465 aa17.16■□□□□ 0.34
SCFD1-201ENST00000311943 JCADQ9P266 1359 aa17.16■□□□□ 0.34
SCFD1-201ENST00000311943 SRPK2P78362 688 aaKnown RBP17.15■□□□□ 0.34
SCFD1-201ENST00000311943 KRT28Q7Z3Y7 464 aa17.14■□□□□ 0.34
SCFD1-201ENST00000311943 PNPLA6Q8IY17 1366 aa17.14■□□□□ 0.33
SCFD1-201ENST00000311943 ST20-MTHFSA0A0A6YYL1 179 aa17.14■□□□□ 0.33
SCFD1-201ENST00000311943 CABLES1Q8TDN4 633 aa17.14■□□□□ 0.33
SCFD1-201ENST00000311943 CLSPNQ9HAW4 1339 aa17.13■□□□□ 0.33
SCFD1-201ENST00000311943 LRRC59Q96AG4 307 aaKnown RBP17.13■□□□□ 0.33
SCFD1-201ENST00000311943 NPHP3Q7Z494 1330 aa17.12■□□□□ 0.33
SCFD1-201ENST00000311943 ADAMTS2O95450 1211 aa17.11■□□□□ 0.33
SCFD1-201ENST00000311943 LMOD2Q6P5Q4 547 aa17.11■□□□□ 0.33
SCFD1-201ENST00000311943 PSME1Q06323 249 aa17.11■□□□□ 0.33
SCFD1-201ENST00000311943 ANKARQ7Z5J8 1434 aa17.1■□□□□ 0.33
SCFD1-201ENST00000311943 CABP1Q9NZU7 370 aa17.1■□□□□ 0.33
SCFD1-201ENST00000311943 NUTM2GQ5VZR2 741 aa17.09■□□□□ 0.33
SCFD1-201ENST00000311943 NGDNQ8NEJ9 315 aaKnown RBP17.09■□□□□ 0.33
SCFD1-201ENST00000311943 SHPRHQ149N8 1683 aa17.09■□□□□ 0.33
SCFD1-201ENST00000311943 TESK2Q96S53 571 aa17.09■□□□□ 0.33
SCFD1-201ENST00000311943 ACEP12821 1306 aa17.09■□□□□ 0.33
SCFD1-201ENST00000311943 SPATA31A3Q5VYP0 1347 aa17.08■□□□□ 0.32
SCFD1-201ENST00000311943 CCDC61Q9Y6R9 512 aa17.08■□□□□ 0.32
SCFD1-201ENST00000311943 KIF1AQ12756 1690 aa17.07■□□□□ 0.32
SCFD1-201ENST00000311943 PPIP5K1Q6PFW1 1433 aa17.07■□□□□ 0.32
SCFD1-201ENST00000311943 PAK3O75914 559 aaPredicted RBP17.07■□□□□ 0.32
SCFD1-201ENST00000311943 POTEAQ6S8J7 498 aa17.07■□□□□ 0.32
SCFD1-201ENST00000311943 PHF23Q9BUL5 403 aaPredicted RBP17.07■□□□□ 0.32
SCFD1-201ENST00000311943 USP47Q96K76 1375 aa17.07■□□□□ 0.32
SCFD1-201ENST00000311943 TOPAZ1Q8N9V7 1692 aa17.06■□□□□ 0.32
SCFD1-201ENST00000311943 C8orf37Q96NL8 207 aa17.05■□□□□ 0.32
SCFD1-201ENST00000311943 MEX3CQ5U5Q3 659 aaKnown RBP17.04■□□□□ 0.32
SCFD1-201ENST00000311943 SPATA31A6Q5VVP1 1343 aa17.04■□□□□ 0.32
SCFD1-201ENST00000311943 EVC2Q86UK5 1308 aa17.04■□□□□ 0.32
SCFD1-201ENST00000311943 EIF3AQ14152 1382 aaKnown RBP17.04■□□□□ 0.32
SCFD1-201ENST00000311943 TIMELESSQ9UNS1 1208 aa17.04■□□□□ 0.32
SCFD1-201ENST00000311943 TRPM3Q9HCF6 1732 aaPredicted RBP17.04■□□□□ 0.32
SCFD1-201ENST00000311943 SLC12A5Q9H2X9 1139 aa17.03■□□□□ 0.32
SCFD1-201ENST00000311943 PLEKHG3A1L390 1219 aa17.03■□□□□ 0.32
SCFD1-201ENST00000311943 TNS3Q68CZ2 1445 aa17.02■□□□□ 0.32
SCFD1-201ENST00000311943 ITSN1Q15811 1721 aa17■□□□□ 0.31
SCFD1-201ENST00000311943 POLR3AO14802 1390 aaPredicted RBP17■□□□□ 0.31
SCFD1-201ENST00000311943 TMC1Q8TDI8 760 aa17■□□□□ 0.31
SCFD1-201ENST00000311943 COL22A1Q8NFW1 1626 aaPredicted RBP16.99■□□□□ 0.31
SCFD1-201ENST00000311943 AFF2P51816 1311 aa16.99■□□□□ 0.31
SCFD1-201ENST00000311943 ZRANB1Q9UGI0 708 aa16.99■□□□□ 0.31
SCFD1-201ENST00000311943 HSPA5P11021 654 aaKnown RBP16.98■□□□□ 0.31
SCFD1-201ENST00000311943 ALS2Q96Q42 1657 aa16.98■□□□□ 0.31
SCFD1-201ENST00000311943 SBNO1A3KN83 1393 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms