RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 ABCC3O15438 1527 aa16.78■□□□□ 0.28
HIF3A-204ENST00000300862 POLR3AO14802 1390 aaPredicted RBP16.78■□□□□ 0.28
HIF3A-204ENST00000300862 CABP2Q9NPB3 220 aa16.78■□□□□ 0.28
HIF3A-204ENST00000300862 HECW2Q9P2P5 1572 aa16.78■□□□□ 0.28
HIF3A-204ENST00000300862 RGS3P49796 1198 aa16.78■□□□□ 0.28
HIF3A-204ENST00000300862 LAS1LQ9Y4W2 734 aaKnown RBP16.78■□□□□ 0.28
HIF3A-204ENST00000300862 SETBP1Q9Y6X0 1596 aa16.77■□□□□ 0.28
HIF3A-204ENST00000300862 PPLO60437 1756 aa16.77■□□□□ 0.28
HIF3A-204ENST00000300862 IDI1Q13907 227 aa16.77■□□□□ 0.28
HIF3A-204ENST00000300862 QRICH2Q9H0J4 1663 aa16.77■□□□□ 0.27
HIF3A-204ENST00000300862 RPGRIP1LQ68CZ1 1315 aa16.76■□□□□ 0.27
HIF3A-204ENST00000300862 TCP11L2Q8N4U5 519 aa16.76■□□□□ 0.27
HIF3A-204ENST00000300862 VGFO15240 615 aaPredicted RBP16.75■□□□□ 0.27
HIF3A-204ENST00000300862 PANK1Q8TE04 598 aa16.75■□□□□ 0.27
HIF3A-204ENST00000300862 CGNL1Q0VF96 1302 aa16.74■□□□□ 0.27
HIF3A-204ENST00000300862 FRAT1Q92837 279 aaPredicted RBP16.74■□□□□ 0.27
HIF3A-204ENST00000300862 SIGLEC1Q9BZZ2 1709 aa16.74■□□□□ 0.27
HIF3A-204ENST00000300862 CANXP27824 592 aaKnown RBP16.74■□□□□ 0.27
HIF3A-204ENST00000300862 EVC2Q86UK5 1308 aa16.73■□□□□ 0.27
HIF3A-204ENST00000300862 RUNDC1Q96C34 613 aa16.73■□□□□ 0.27
HIF3A-204ENST00000300862 COG6Q9Y2V7 657 aa16.73■□□□□ 0.27
HIF3A-204ENST00000300862 IGHDP01880 384 aa16.72■□□□□ 0.27
HIF3A-204ENST00000300862 BCL2L13Q9BXK5 485 aa16.72■□□□□ 0.27
HIF3A-204ENST00000300862 CFAP74Q9C0B2 1584 aa16.71■□□□□ 0.27
HIF3A-204ENST00000300862 SLC4A3P48751 1232 aa16.71■□□□□ 0.27
HIF3A-204ENST00000300862 ZC3H13Q5T200 1668 aaKnown RBP16.71■□□□□ 0.27
HIF3A-204ENST00000300862 CAMSAP1Q5T5Y3 1602 aa16.71■□□□□ 0.26
HIF3A-204ENST00000300862 GLI2P10070 1586 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 U2AF1L5P0DN76 240 aaPredicted RBP16.7■□□□□ 0.26
HIF3A-204ENST00000300862 SRPK2P78362 688 aaKnown RBP16.7■□□□□ 0.26
HIF3A-204ENST00000300862 U2AF1Q01081 240 aaKnown RBP eCLIP16.7■□□□□ 0.26
HIF3A-204ENST00000300862 YEATS2Q9ULM3 1422 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 C8orf34Q49A92 452 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 NGEFQ8N5V2 710 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 IL27Q8NEV9 243 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 TNNQ9UQP3 1299 aa16.7■□□□□ 0.26
HIF3A-204ENST00000300862 SHPRHQ149N8 1683 aa16.69■□□□□ 0.26
HIF3A-204ENST00000300862 TULP4Q9NRJ4 1543 aa16.69■□□□□ 0.26
HIF3A-204ENST00000300862 CFAP53Q96M91 514 aa16.69■□□□□ 0.26
HIF3A-204ENST00000300862 FAM161AQ3B820 660 aa16.68■□□□□ 0.26
HIF3A-204ENST00000300862 GGNBP2Q9H3C7 697 aa16.68■□□□□ 0.26
HIF3A-204ENST00000300862 MINK1Q8N4C8 1332 aaPredicted RBP16.68■□□□□ 0.26
HIF3A-204ENST00000300862 NEXMIFQ5QGS0 1516 aa16.68■□□□□ 0.26
HIF3A-204ENST00000300862 FBXO31Q5XUX0 539 aaPredicted RBP16.68■□□□□ 0.26
HIF3A-204ENST00000300862 EIF5BO60841 1220 aaKnown RBP16.67■□□□□ 0.26
HIF3A-204ENST00000300862 ANKRD36BQ8N2N9 1353 aa16.67■□□□□ 0.26
HIF3A-204ENST00000300862 DIP2CQ9Y2E4 1556 aa16.67■□□□□ 0.26
HIF3A-204ENST00000300862 RARSP54136 660 aaKnown RBP16.67■□□□□ 0.26
HIF3A-204ENST00000300862 ANO8Q9HCE9 1232 aaPredicted RBP16.67■□□□□ 0.26
HIF3A-204ENST00000300862 NEO1Q92859 1461 aa16.66■□□□□ 0.26
HIF3A-204ENST00000300862 PDE3AQ14432 1141 aa16.66■□□□□ 0.26
HIF3A-204ENST00000300862 CLUAP1Q96AJ1 413 aa16.66■□□□□ 0.26
HIF3A-204ENST00000300862 NEFMP07197 916 aa16.65■□□□□ 0.26
HIF3A-204ENST00000300862 RLBP1P12271 317 aa16.65■□□□□ 0.26
HIF3A-204ENST00000300862 PRAM1Q96QH2 718 aa16.65■□□□□ 0.26
HIF3A-204ENST00000300862 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
HIF3A-204ENST00000300862 PHF23Q9BUL5 403 aaPredicted RBP16.65■□□□□ 0.26
HIF3A-204ENST00000300862 ARHGEF28Q8N1W1 1705 aaKnown RBP16.64■□□□□ 0.26
HIF3A-204ENST00000300862 A0A1W2PP64 1363 aa16.64■□□□□ 0.25
HIF3A-204ENST00000300862 PIK3C2BO00750 1634 aa16.64■□□□□ 0.25
HIF3A-204ENST00000300862 CYB5RLQ6IPT4 315 aa16.64■□□□□ 0.25
HIF3A-204ENST00000300862 SLC52A1Q9NWF4 448 aa16.64■□□□□ 0.25
HIF3A-204ENST00000300862 IQSEC2Q5JU85 1478 aa16.64■□□□□ 0.25
HIF3A-204ENST00000300862 POGKQ9P215 609 aa16.63■□□□□ 0.25
HIF3A-204ENST00000300862 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
HIF3A-204ENST00000300862 DDRGK1Q96HY6 314 aa16.63■□□□□ 0.25
HIF3A-204ENST00000300862 TSR2Q969E8 191 aaKnown RBP16.62■□□□□ 0.25
HIF3A-204ENST00000300862 PUS7Q96PZ0 661 aaKnown RBP16.61■□□□□ 0.25
HIF3A-204ENST00000300862 USP35Q9P2H5 1018 aa16.61■□□□□ 0.25
HIF3A-204ENST00000300862 ARHGAP31Q2M1Z3 1444 aa16.6■□□□□ 0.25
HIF3A-204ENST00000300862 MYO5BQ9ULV0 1848 aa16.6■□□□□ 0.25
HIF3A-204ENST00000300862 STAG3Q9UJ98 1225 aa16.6■□□□□ 0.25
HIF3A-204ENST00000300862 PCDHB15Q9Y5E8 787 aa16.6■□□□□ 0.25
HIF3A-204ENST00000300862 FYB1O15117 783 aa16.59■□□□□ 0.25
HIF3A-204ENST00000300862 RTN4Q9NQC3 1192 aaKnown RBP16.59■□□□□ 0.25
HIF3A-204ENST00000300862 USP32Q8NFA0 1604 aa16.59■□□□□ 0.25
HIF3A-204ENST00000300862 CCDC27Q2M243 656 aa16.58■□□□□ 0.25
HIF3A-204ENST00000300862 RICTORQ6R327 1708 aa16.58■□□□□ 0.25
HIF3A-204ENST00000300862 NSD2O96028 1365 aa16.58■□□□□ 0.24
HIF3A-204ENST00000300862 FBLN1P23142 703 aa16.58■□□□□ 0.24
HIF3A-204ENST00000300862 MYH16Q9H6N6 1097 aa16.58■□□□□ 0.24
HIF3A-204ENST00000300862 ABCC11Q96J66 1382 aa16.57■□□□□ 0.24
HIF3A-204ENST00000300862 CDK19Q9BWU1 502 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 TERF2IPQ9NYB0 399 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 CABP1Q9NZU7 370 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 NINLQ9Y2I6 1382 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 PTPRMP28827 1452 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 SEC24BO95487 1268 aa16.56■□□□□ 0.24
HIF3A-204ENST00000300862 YTHDC2Q9H6S0 1430 aaKnown RBP16.56■□□□□ 0.24
HIF3A-204ENST00000300862 PPM1GO15355 546 aaPredicted RBP16.55■□□□□ 0.24
HIF3A-204ENST00000300862 TMPOP42166 694 aaKnown RBP16.55■□□□□ 0.24
HIF3A-204ENST00000300862 FAM69CQ0P6D2 419 aa16.55■□□□□ 0.24
HIF3A-204ENST00000300862 PLEKHF1Q96S99 279 aa16.55■□□□□ 0.24
HIF3A-204ENST00000300862 ZFYVE9O95405 1425 aa16.55■□□□□ 0.24
HIF3A-204ENST00000300862 WAPLQ7Z5K2 1190 aa16.55■□□□□ 0.24
HIF3A-204ENST00000300862 EXOSC9Q06265 439 aaKnown RBP16.54■□□□□ 0.24
HIF3A-204ENST00000300862 MLECQ14165 292 aa16.54■□□□□ 0.24
HIF3A-204ENST00000300862 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.54■□□□□ 0.24
HIF3A-204ENST00000300862 TMEM131LA2VDJ0 1609 aa16.54■□□□□ 0.24
HIF3A-204ENST00000300862 TRIM35Q9UPQ4 493 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms