RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZHX1Q9UKY1 873 aaPredicted RBP16.95■□□□□ 0.3
SKA3-201ENST00000298260 PLA2R1Q13018 1463 aa16.94■□□□□ 0.3
SKA3-201ENST00000298260 PRDM15P57071 1507 aaPredicted RBP16.94■□□□□ 0.3
SKA3-201ENST00000298260 SSFA2P28290 1259 aa16.94■□□□□ 0.3
SKA3-201ENST00000298260 ZSCAN30Q86W11 494 aa16.94■□□□□ 0.3
SKA3-201ENST00000298260 CALD1Q05682 793 aaKnown RBP16.93■□□□□ 0.3
SKA3-201ENST00000298260 DNAJC5Q9H3Z4 198 aa16.93■□□□□ 0.3
SKA3-201ENST00000298260 CROCC2H7BZ55 1655 aa16.93■□□□□ 0.3
SKA3-201ENST00000298260 OFD1O75665 1012 aa16.93■□□□□ 0.3
SKA3-201ENST00000298260 MSNP26038 577 aaKnown RBP16.93■□□□□ 0.3
SKA3-201ENST00000298260 DDIT3P35638 169 aa16.93■□□□□ 0.3
SKA3-201ENST00000298260 NCLP19338 710 aaKnown RBP16.92■□□□□ 0.3
SKA3-201ENST00000298260 JARID2Q92833 1246 aaPredicted RBP16.92■□□□□ 0.3
SKA3-201ENST00000298260 FAM135AQ9P2D6 1515 aa16.92■□□□□ 0.3
SKA3-201ENST00000298260 ASXL2Q76L83 1435 aa16.9■□□□□ 0.3
SKA3-201ENST00000298260 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
SKA3-201ENST00000298260 CCDC173Q0VFZ6 552 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 TCP11L2Q8N4U5 519 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 GBP4Q96PP9 640 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 DDX49Q9Y6V7 483 aaKnown RBP16.89■□□□□ 0.29
SKA3-201ENST00000298260 RAB3GAP1Q15042 981 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 FTSJ3Q8IY81 847 aaKnown RBP16.89■□□□□ 0.29
SKA3-201ENST00000298260 CARD14Q9BXL6 1004 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 AK9Q5TCS8 1911 aa16.89■□□□□ 0.29
SKA3-201ENST00000298260 UQCRHLA0A096LP55 91 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 UQCRHP07919 91 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 CHAMP1Q96JM3 812 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 LNPKQ9C0E8 428 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 SYCP2Q9BX26 1530 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 TSR2Q969E8 191 aaKnown RBP16.88■□□□□ 0.29
SKA3-201ENST00000298260 ITSN2Q9NZM3 1697 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 PIK3C2GO75747 1445 aa16.88■□□□□ 0.29
SKA3-201ENST00000298260 MVPQ14764 893 aaKnown RBP16.88■□□□□ 0.29
SKA3-201ENST00000298260 ASXL1Q8IXJ9 1541 aa16.87■□□□□ 0.29
SKA3-201ENST00000298260 SAMD9LQ8IVG5 1584 aa16.87■□□□□ 0.29
SKA3-201ENST00000298260 ITPRIPQ8IWB1 547 aa16.87■□□□□ 0.29
SKA3-201ENST00000298260 PPP1R9BQ96SB3 815 aa16.87■□□□□ 0.29
SKA3-201ENST00000298260 EFCAB2Q5VUJ9 269 aa16.86■□□□□ 0.29
SKA3-201ENST00000298260 GAS2L2Q8NHY3 880 aa16.86■□□□□ 0.29
SKA3-201ENST00000298260 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.86■□□□□ 0.29
SKA3-201ENST00000298260 MPNDQ8N594 471 aa16.86■□□□□ 0.29
SKA3-201ENST00000298260 TSC1Q92574 1164 aa16.86■□□□□ 0.29
SKA3-201ENST00000298260 ISY1Q9ULR0 285 aaKnown RBP16.86■□□□□ 0.29
SKA3-201ENST00000298260 CAVIN1Q6NZI2 390 aaKnown RBP16.85■□□□□ 0.29
SKA3-201ENST00000298260 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.85■□□□□ 0.29
SKA3-201ENST00000298260 SMC5Q8IY18 1101 aa16.85■□□□□ 0.29
SKA3-201ENST00000298260 KIF2CQ99661 725 aa16.85■□□□□ 0.29
SKA3-201ENST00000298260 ANP32BQ92688 251 aaKnown RBP16.84■□□□□ 0.29
SKA3-201ENST00000298260 NCOA3Q9Y6Q9 1424 aa16.84■□□□□ 0.29
SKA3-201ENST00000298260 UHRF1BP1LA0JNW5 1464 aa16.84■□□□□ 0.29
SKA3-201ENST00000298260 DZIP1LQ8IYY4 767 aaKnown RBP16.84■□□□□ 0.29
SKA3-201ENST00000298260 RBSNQ9H1K0 784 aa16.83■□□□□ 0.29
SKA3-201ENST00000298260 PKP1Q13835 747 aa16.83■□□□□ 0.28
SKA3-201ENST00000298260 MCTP1Q6DN14 999 aa16.83■□□□□ 0.28
SKA3-201ENST00000298260 RBM27Q9P2N5 1060 aaKnown RBP16.83■□□□□ 0.28
SKA3-201ENST00000298260 NINLQ9Y2I6 1382 aa16.83■□□□□ 0.28
SKA3-201ENST00000298260 TRAPPC8Q9Y2L5 1435 aa16.82■□□□□ 0.28
SKA3-201ENST00000298260 MYO5CQ9NQX4 1742 aa16.81■□□□□ 0.28
SKA3-201ENST00000298260 TRIM27P14373 513 aa16.81■□□□□ 0.28
SKA3-201ENST00000298260 AAMPQ13685 434 aa16.81■□□□□ 0.28
SKA3-201ENST00000298260 SKOR2Q2VWA4 1001 aaPredicted RBP16.81■□□□□ 0.28
SKA3-201ENST00000298260 BAG4O95429 457 aaKnown RBP16.81■□□□□ 0.28
SKA3-201ENST00000298260 PREX2Q70Z35 1606 aa16.81■□□□□ 0.28
SKA3-201ENST00000298260 RBM25P49756 843 aaKnown RBP16.8■□□□□ 0.28
SKA3-201ENST00000298260 ZKSCAN2Q63HK3 967 aa16.8■□□□□ 0.28
SKA3-201ENST00000298260 SMC4Q9NTJ3 1288 aa16.8■□□□□ 0.28
SKA3-201ENST00000298260 PLCH2O75038 1416 aa16.8■□□□□ 0.28
SKA3-201ENST00000298260 FAM177BA6PVY3 158 aa16.8■□□□□ 0.28
SKA3-201ENST00000298260 PRIM1P49642 420 aaKnown RBP16.8■□□□□ 0.28
SKA3-201ENST00000298260 FOXD4L5Q5VV16 416 aaPredicted RBP16.78■□□□□ 0.28
SKA3-201ENST00000298260 FOXD4L4Q8WXT5 416 aaPredicted RBP16.78■□□□□ 0.28
SKA3-201ENST00000298260 SNX21Q969T3 373 aa16.78■□□□□ 0.28
SKA3-201ENST00000298260 RAPGEF3O95398 923 aa16.78■□□□□ 0.28
SKA3-201ENST00000298260 ZSCAN23Q3MJ62 389 aa16.78■□□□□ 0.28
SKA3-201ENST00000298260 RNF214Q8ND24 703 aa16.78■□□□□ 0.28
SKA3-201ENST00000298260 RUNDC1Q96C34 613 aa16.78■□□□□ 0.28
SKA3-201ENST00000298260 RIMBP3CA6NJZ7 1639 aa16.77■□□□□ 0.28
SKA3-201ENST00000298260 RIMBP3BA6NNM3 1639 aa16.77■□□□□ 0.28
SKA3-201ENST00000298260 RIMBP3Q9UFD9 1639 aa16.77■□□□□ 0.28
SKA3-201ENST00000298260 KLHL40Q2TBA0 621 aa16.77■□□□□ 0.28
SKA3-201ENST00000298260 TMEM57Q8N5G2 664 aa16.77■□□□□ 0.28
SKA3-201ENST00000298260 K7ELQ4 463 aaPredicted RBP16.77■□□□□ 0.27
SKA3-201ENST00000298260 EXOSC9Q06265 439 aaKnown RBP16.77■□□□□ 0.27
SKA3-201ENST00000298260 SSH1Q8WYL5 1049 aa16.76■□□□□ 0.27
SKA3-201ENST00000298260 C1orf115Q9H7X2 142 aa16.76■□□□□ 0.27
SKA3-201ENST00000298260 CIZ1Q9ULV3 898 aaPredicted RBP16.76■□□□□ 0.27
SKA3-201ENST00000298260 NOL7Q9UMY1 257 aaKnown RBP16.76■□□□□ 0.27
SKA3-201ENST00000298260 CCDC141Q6ZP82 1450 aa16.76■□□□□ 0.27
SKA3-201ENST00000298260 FAM69CQ0P6D2 419 aa16.75■□□□□ 0.27
SKA3-201ENST00000298260 CDCA8Q53HL2 280 aa16.75■□□□□ 0.27
SKA3-201ENST00000298260 MORC1Q86VD1 984 aa16.75■□□□□ 0.27
SKA3-201ENST00000298260 NOB1Q9ULX3 412 aaKnown RBP16.75■□□□□ 0.27
SKA3-201ENST00000298260 FANCAO15360 1455 aa16.75■□□□□ 0.27
SKA3-201ENST00000298260 GOLGA6L22H0YM25 854 aa16.75■□□□□ 0.27
SKA3-201ENST00000298260 SPAG9O60271 1321 aaKnown RBP16.75■□□□□ 0.27
SKA3-201ENST00000298260 ZMYM3Q14202 1370 aa16.74■□□□□ 0.27
SKA3-201ENST00000298260 SHANK2Q9UPX8 1470 aa16.74■□□□□ 0.27
SKA3-201ENST00000298260 NSFL1CQ9UNZ2 370 aaKnown RBP16.74■□□□□ 0.27
SKA3-201ENST00000298260 PLXNC1O60486 1568 aa16.74■□□□□ 0.27
SKA3-201ENST00000298260 PRPF40AO75400 957 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms