RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ARGLU1Q9NWB6 273 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-201ENST00000295550 EIF2AK4Q9P2K8 1649 aaKnown RBP12.03□□□□□ -0.48
COL6A3-201ENST00000295550 DZIP1LQ8IYY4 767 aaKnown RBP12.02□□□□□ -0.48
COL6A3-201ENST00000295550 FOXD4L6Q3SYB3 417 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-201ENST00000295550 FOXD4L3Q6VB84 417 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-201ENST00000295550 ACBD3Q9H3P7 528 aa12.02□□□□□ -0.49
COL6A3-201ENST00000295550 URB2Q14146 1524 aaKnown RBP12.02□□□□□ -0.49
COL6A3-201ENST00000295550 MTERF4Q7Z6M4 381 aaKnown RBP12.02□□□□□ -0.49
COL6A3-201ENST00000295550 CCDC191Q8NCU4 936 aa12.01□□□□□ -0.49
COL6A3-201ENST00000295550 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL6A3-201ENST00000295550 GRIN2AQ12879 1464 aa12.01□□□□□ -0.49
COL6A3-201ENST00000295550 MCTP1Q6DN14 999 aa12.01□□□□□ -0.49
COL6A3-201ENST00000295550 HSP90B2PQ58FF3 399 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 SLC4A3P48751 1232 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 HDAC5Q9UQL6 1122 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 PPP2R1AP30153 589 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 ADAMTS8Q9UP79 889 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 RDXP35241 583 aaKnown RBP12□□□□□ -0.49
COL6A3-201ENST00000295550 ARHGEF11O15085 1522 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 BCL2L13Q9BXK5 485 aa12□□□□□ -0.49
COL6A3-201ENST00000295550 ZNF330Q9Y3S2 320 aaPredicted RBP12□□□□□ -0.49
COL6A3-201ENST00000295550 NUTM2DQ5VT03 806 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-201ENST00000295550 ANKRD20A12PQ8NF67 263 aa11.99□□□□□ -0.49
COL6A3-201ENST00000295550 MLECQ14165 292 aa11.99□□□□□ -0.49
COL6A3-201ENST00000295550 H0YHG0 523 aa11.99□□□□□ -0.49
COL6A3-201ENST00000295550 TCOF1Q13428 1488 aaKnown RBP11.99□□□□□ -0.49
COL6A3-201ENST00000295550 MARCH6O60337 910 aa11.99□□□□□ -0.49
COL6A3-201ENST00000295550 IFT57Q9NWB7 429 aa11.99□□□□□ -0.49
COL6A3-201ENST00000295550 CCDC66A2RUB6 948 aa11.98□□□□□ -0.49
COL6A3-201ENST00000295550 CDR1P51861 262 aa11.98□□□□□ -0.49
COL6A3-201ENST00000295550 DNMT1P26358 1616 aaKnown RBP11.98□□□□□ -0.49
COL6A3-201ENST00000295550 ADAMTS12P58397 1594 aa11.98□□□□□ -0.49
COL6A3-201ENST00000295550 DCTN1Q14203 1278 aa11.98□□□□□ -0.49
COL6A3-201ENST00000295550 PCMTD1Q96MG8 357 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-201ENST00000295550 TOMM22Q9NS69 142 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 WDR62O43379 1518 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 FAM184AQ8NB25 1140 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 MNS1Q8NEH6 495 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 COG3Q96JB2 828 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 RALGAPBQ86X10 1494 aa11.97□□□□□ -0.49
COL6A3-201ENST00000295550 HOOK1Q9UJC3 728 aaKnown RBP11.96□□□□□ -0.49
COL6A3-201ENST00000295550 DIAPH1O60610 1272 aaKnown RBP11.96□□□□□ -0.49
COL6A3-201ENST00000295550 REC8O95072 547 aa11.96□□□□□ -0.49
COL6A3-201ENST00000295550 ANKRD45Q5TZF3 282 aa11.96□□□□□ -0.49
COL6A3-201ENST00000295550 NFKBIBQ15653 356 aa11.96□□□□□ -0.5
COL6A3-201ENST00000295550 KIAA0556O60303 1618 aa11.96□□□□□ -0.5
COL6A3-201ENST00000295550 SLC4A10Q6U841 1118 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 PANK1Q8TE04 598 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 BACH2Q9BYV9 841 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 AKAP17AQ02040 695 aaKnown RBP11.95□□□□□ -0.5
COL6A3-201ENST00000295550 PDE3AQ14432 1141 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 CHMP5Q9NZZ3 219 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 CCDC39Q9UFE4 941 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 ARHGEF12Q9NZN5 1544 aa11.95□□□□□ -0.5
COL6A3-201ENST00000295550 NASPP49321 788 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-201ENST00000295550 CHMP4CQ96CF2 233 aa11.94□□□□□ -0.5
COL6A3-201ENST00000295550 CDCA7LQ96GN5 454 aa11.94□□□□□ -0.5
COL6A3-201ENST00000295550 RIPK4P57078 832 aa11.93□□□□□ -0.5
COL6A3-201ENST00000295550 API5Q9BZZ5 524 aaKnown RBP11.93□□□□□ -0.5
COL6A3-201ENST00000295550 C22orf23Q9BZE7 217 aa11.93□□□□□ -0.5
COL6A3-201ENST00000295550 NAP1L1P55209 391 aaKnown RBP11.93□□□□□ -0.5
COL6A3-201ENST00000295550 TCEAL9Q9UHQ7 104 aa11.93□□□□□ -0.5
COL6A3-201ENST00000295550 SAMD9Q5K651 1589 aa11.93□□□□□ -0.5
COL6A3-201ENST00000295550 FBXW7Q969H0 707 aa11.93□□□□□ -0.5
COL6A3-201ENST00000295550 TMX4Q9H1E5 349 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-201ENST00000295550 MINK1Q8N4C8 1332 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-201ENST00000295550 CT47B1P0C2W7 299 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-201ENST00000295550 CAGE1Q8TC20 777 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 RILPL2Q969X0 211 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 PODXL2Q9NZ53 605 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 NBPF1Q3BBV0 1214 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 CCDC184Q52MB2 194 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 BCL11BQ9C0K0 894 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-201ENST00000295550 DIAPH3Q9NSV4 1193 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 NKTRP30414 1462 aaKnown RBP11.92□□□□□ -0.5
COL6A3-201ENST00000295550 PLB1Q6P1J6 1458 aa11.92□□□□□ -0.5
COL6A3-201ENST00000295550 GNAI1P63096 354 aa11.91□□□□□ -0.5
COL6A3-201ENST00000295550 BICD2Q8TD16 824 aa11.91□□□□□ -0.5
COL6A3-201ENST00000295550 EID1Q9Y6B2 187 aa11.91□□□□□ -0.5
COL6A3-201ENST00000295550 HSP90AB3PQ58FF7 597 aa11.91□□□□□ -0.5
COL6A3-201ENST00000295550 WWC1Q8IX03 1113 aa11.91□□□□□ -0.5
COL6A3-201ENST00000295550 SHANK2Q9UPX8 1470 aa11.9□□□□□ -0.5
COL6A3-201ENST00000295550 PAK3O75914 559 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-201ENST00000295550 ABCA5Q8WWZ7 1642 aa11.9□□□□□ -0.5
COL6A3-201ENST00000295550 PLCD4Q9BRC7 762 aa11.9□□□□□ -0.5
COL6A3-201ENST00000295550 R3HCC1Q9Y3T6 440 aaKnown RBP11.9□□□□□ -0.5
COL6A3-201ENST00000295550 LEKR1Q6ZMV7 388 aa11.9□□□□□ -0.51
COL6A3-201ENST00000295550 AMPHP49418 695 aa11.9□□□□□ -0.51
COL6A3-201ENST00000295550 PTPRKQ15262 1439 aa11.89□□□□□ -0.51
COL6A3-201ENST00000295550 NAT10Q9H0A0 1025 aaKnown RBP11.89□□□□□ -0.51
COL6A3-201ENST00000295550 TSPYL1Q9H0U9 437 aa11.89□□□□□ -0.51
COL6A3-201ENST00000295550 TRIM29Q14134 588 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 INTS3Q68E01 1043 aaKnown RBP11.88□□□□□ -0.51
COL6A3-201ENST00000295550 TCP11L2Q8N4U5 519 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 CDC45O75419 566 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 ANO2Q9NQ90 1003 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-201ENST00000295550 SASS6Q6UVJ0 657 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 MYO6Q9UM54 1294 aa11.88□□□□□ -0.51
COL6A3-201ENST00000295550 GPATCH8Q9UKJ3 1502 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms