RNA–Protein interactions for RNA: ENST00000290330.7

SNF8-201, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SNF8, Length 951 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-201ENST00000290330 NHSL1Q5SYE7 1610 aa15.39■□□□□ 0.05
SNF8-201ENST00000290330 SHPRHQ149N8 1683 aa15.38■□□□□ 0.05
SNF8-201ENST00000290330 YTHDC2Q9H6S0 1430 aaKnown RBP15.38■□□□□ 0.05
SNF8-201ENST00000290330 PLEKHH1Q9ULM0 1364 aa15.37■□□□□ 0.05
SNF8-201ENST00000290330 MSH5O43196 834 aa15.37■□□□□ 0.05
SNF8-201ENST00000290330 MEX3CQ5U5Q3 659 aaKnown RBP15.37■□□□□ 0.05
SNF8-201ENST00000290330 SIRT1Q96EB6 747 aa15.37■□□□□ 0.05
SNF8-201ENST00000290330 NUTM2BA6NNL0 878 aaPredicted RBP15.36■□□□□ 0.05
SNF8-201ENST00000290330 NUTM2EB1AL46 878 aaPredicted RBP15.36■□□□□ 0.05
SNF8-201ENST00000290330 NUTM2AQ8IVF1 878 aaPredicted RBP15.36■□□□□ 0.05
SNF8-201ENST00000290330 SOS2Q07890 1332 aaPredicted RBP15.36■□□□□ 0.05
SNF8-201ENST00000290330 CDC42BPGQ6DT37 1551 aa15.36■□□□□ 0.05
SNF8-201ENST00000290330 DHX57Q6P158 1386 aaKnown RBP15.35■□□□□ 0.05
SNF8-201ENST00000290330 PNPLA6Q8IY17 1366 aa15.35■□□□□ 0.05
SNF8-201ENST00000290330 ESCO1Q5FWF5 840 aa15.34■□□□□ 0.05
SNF8-201ENST00000290330 LAMC1P11047 1609 aa15.34■□□□□ 0.05
SNF8-201ENST00000290330 KNDC1Q76NI1 1749 aa15.34■□□□□ 0.05
SNF8-201ENST00000290330 DCAF11Q8TEB1 546 aa15.33■□□□□ 0.04
SNF8-201ENST00000290330 KDM2AQ9Y2K7 1162 aa15.33■□□□□ 0.04
SNF8-201ENST00000290330 NUTM2FA1L443 756 aa15.32■□□□□ 0.04
SNF8-201ENST00000290330 ZNF772Q68DY9 489 aaPredicted RBP15.32■□□□□ 0.04
SNF8-201ENST00000290330 STAC3Q96MF2 364 aa15.32■□□□□ 0.04
SNF8-201ENST00000290330 FOXO3O43524 673 aa15.3■□□□□ 0.04
SNF8-201ENST00000290330 NPHP3Q7Z494 1330 aa15.3■□□□□ 0.04
SNF8-201ENST00000290330 PRAM1Q96QH2 718 aa15.3■□□□□ 0.04
SNF8-201ENST00000290330 ADGRB1O14514 1584 aa15.28■□□□□ 0.04
SNF8-201ENST00000290330 SAFB2Q14151 953 aaKnown RBP eCLIP15.28■□□□□ 0.04
SNF8-201ENST00000290330 AFF2P51816 1311 aa15.27■□□□□ 0.04
SNF8-201ENST00000290330 XPCQ01831 940 aaPredicted RBP15.27■□□□□ 0.04
SNF8-201ENST00000290330 DLC1Q96QB1 1528 aa15.27■□□□□ 0.03
SNF8-201ENST00000290330 PXDNQ92626 1479 aa15.27■□□□□ 0.03
SNF8-201ENST00000290330 C8orf37Q96NL8 207 aa15.26■□□□□ 0.03
SNF8-201ENST00000290330 POGKQ9P215 609 aa15.26■□□□□ 0.03
SNF8-201ENST00000290330 TRAK1Q9UPV9 953 aa15.26■□□□□ 0.03
SNF8-201ENST00000290330 FMN2Q9NZ56 1722 aa15.26■□□□□ 0.03
SNF8-201ENST00000290330 ADAMTS2O95450 1211 aa15.25■□□□□ 0.03
SNF8-201ENST00000290330 RXRBP28702 533 aa15.24■□□□□ 0.03
SNF8-201ENST00000290330 NGLY1Q96IV0 654 aa15.23■□□□□ 0.03
SNF8-201ENST00000290330 PHF8Q9UPP1 1060 aa15.23■□□□□ 0.03
SNF8-201ENST00000290330 COL22A1Q8NFW1 1626 aaPredicted RBP15.21■□□□□ 0.03
SNF8-201ENST00000290330 KRT28Q7Z3Y7 464 aa15.21■□□□□ 0.03
SNF8-201ENST00000290330 HIRIP3Q9BW71 556 aaPredicted RBP15.21■□□□□ 0.03
SNF8-201ENST00000290330 SPATA31A3Q5VYP0 1347 aa15.2■□□□□ 0.02
SNF8-201ENST00000290330 MINK1Q8N4C8 1332 aaPredicted RBP15.2■□□□□ 0.02
SNF8-201ENST00000290330 KIF1AQ12756 1690 aa15.2■□□□□ 0.02
SNF8-201ENST00000290330 QTRT2Q9H974 415 aaKnown RBP15.2■□□□□ 0.02
SNF8-201ENST00000290330 ADGRB2O60241 1585 aa15.19■□□□□ 0.02
SNF8-201ENST00000290330 ANKARQ7Z5J8 1434 aa15.19■□□□□ 0.02
SNF8-201ENST00000290330 FNBP4Q8N3X1 1017 aaPredicted RBP15.19■□□□□ 0.02
SNF8-201ENST00000290330 RBM6P78332 1123 aaKnown RBP15.18■□□□□ 0.02
SNF8-201ENST00000290330 PSME1Q06323 249 aa15.18■□□□□ 0.02
SNF8-201ENST00000290330 USP21Q9UK80 565 aa15.18■□□□□ 0.02
SNF8-201ENST00000290330 CDK12Q9NYV4 1490 aaPredicted RBP15.18■□□□□ 0.02
SNF8-201ENST00000290330 RGPD8O14715 1765 aaPredicted RBP15.17■□□□□ 0.02
SNF8-201ENST00000290330 WASLO00401 505 aaPredicted RBP15.17■□□□□ 0.02
SNF8-201ENST00000290330 PMFBP1Q8TBY8 1022 aa15.17■□□□□ 0.02
SNF8-201ENST00000290330 PRR36Q9H6K5 1346 aa15.17■□□□□ 0.02
SNF8-201ENST00000290330 USP32Q8NFA0 1604 aa15.16■□□□□ 0.02
SNF8-201ENST00000290330 EIF3AQ14152 1382 aaKnown RBP15.15■□□□□ 0.02
SNF8-201ENST00000290330 NBPF1Q3BBV0 1214 aa15.15■□□□□ 0.02
SNF8-201ENST00000290330 TNS3Q68CZ2 1445 aa15.15■□□□□ 0.02
SNF8-201ENST00000290330 SBNO1A3KN83 1393 aa15.14■□□□□ 0.01
SNF8-201ENST00000290330 TRPC5Q9UL62 973 aaPredicted RBP15.14■□□□□ 0.01
SNF8-201ENST00000290330 TULP4Q9NRJ4 1543 aa15.13■□□□□ 0.01
SNF8-201ENST00000290330 ARHGEF28Q8N1W1 1705 aaKnown RBP15.13■□□□□ 0.01
SNF8-201ENST00000290330 L3MBTL2Q969R5 705 aa15.13■□□□□ 0.01
SNF8-201ENST00000290330 SIN3AQ96ST3 1273 aa15.13■□□□□ 0.01
SNF8-201ENST00000290330 BCL9LQ86UU0 1499 aa15.13■□□□□ 0.01
SNF8-201ENST00000290330 KIAA1210Q9ULL0 1709 aa15.12■□□□□ 0.01
SNF8-201ENST00000290330 RGS12O14924 1447 aa15.12■□□□□ 0.01
SNF8-201ENST00000290330 CABLES1Q8TDN4 633 aa15.12■□□□□ 0.01
SNF8-201ENST00000290330 UPF1Q92900 1129 aaKnown RBP eCLIP15.12■□□□□ 0.01
SNF8-201ENST00000290330 ATRNO75882 1429 aa15.11■□□□□ 0.01
SNF8-201ENST00000290330 LMOD2Q6P5Q4 547 aa15.11■□□□□ 0.01
SNF8-201ENST00000290330 ARHGEF10O15013 1369 aa15.11■□□□□ 0.01
SNF8-201ENST00000290330 GPRASP1Q5JY77 1395 aa15.11■□□□□ 0.01
SNF8-201ENST00000290330 NUDT16Q96DE0 195 aaKnown RBP15.1■□□□□ 0.01
SNF8-201ENST00000290330 CDK19Q9BWU1 502 aa15.1■□□□□ 0.01
SNF8-201ENST00000290330 PLEKHG5O94827 1062 aa15.09■□□□□ 0.01
SNF8-201ENST00000290330 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
SNF8-201ENST00000290330 NEUROD1Q13562 356 aa15.09■□□□□ 0.01
SNF8-201ENST00000290330 NGDNQ8NEJ9 315 aaKnown RBP15.09■□□□□ 0.01
SNF8-201ENST00000290330 MARF1Q9Y4F3 1742 aaKnown RBP15.09■□□□□ 0.01
SNF8-201ENST00000290330 ATP7BP35670 1465 aa15.08■□□□□ 0.01
SNF8-201ENST00000290330 SLIT2O94813 1529 aa15.08■□□□□ 0.01
SNF8-201ENST00000290330 UNC5CLQ8IV45 518 aa15.08■□□□□ 0
SNF8-201ENST00000290330 GJD4Q96KN9 370 aaPredicted RBP15.07■□□□□ 0
SNF8-201ENST00000290330 CCDC61Q9Y6R9 512 aa15.06■□□□□ 0
SNF8-201ENST00000290330 CENPJQ9HC77 1338 aaPredicted RBP15.06■□□□□ 0
SNF8-201ENST00000290330 TRPM3Q9HCF6 1732 aaPredicted RBP15.06■□□□□ 0
SNF8-201ENST00000290330 FAM83GA6ND36 823 aa15.04■□□□□ -0
SNF8-201ENST00000290330 PAK3O75914 559 aaPredicted RBP15.04■□□□□ -0
SNF8-201ENST00000290330 PIAS4Q8N2W9 510 aaPredicted RBP15.04■□□□□ -0
SNF8-201ENST00000290330 POLR3AO14802 1390 aaPredicted RBP15.03■□□□□ -0
SNF8-201ENST00000290330 PLEKHG3A1L390 1219 aa15.03■□□□□ -0
SNF8-201ENST00000290330 ALS2Q96Q42 1657 aa15.03■□□□□ -0
SNF8-201ENST00000290330 ACEP12821 1306 aa15.02■□□□□ -0
SNF8-201ENST00000290330 SRPK2P78362 688 aaKnown RBP15.02■□□□□ -0
SNF8-201ENST00000290330 NBPF8Q3BBV2 869 aa15.02■□□□□ -0
SNF8-201ENST00000290330 ABCA3Q99758 1704 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms