RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 DMRT2Q9Y5R5 561 aa11.73□□□□□ -0.53
PTPDC1-201ENST00000288976 TMF1P82094 1093 aa11.73□□□□□ -0.53
PTPDC1-201ENST00000288976 USP32Q8NFA0 1604 aa11.73□□□□□ -0.53
PTPDC1-201ENST00000288976 ROBO2Q9HCK4 1378 aa11.73□□□□□ -0.53
PTPDC1-201ENST00000288976 DISP3Q9P2K9 1392 aa11.72□□□□□ -0.53
PTPDC1-201ENST00000288976 KCNA6P17658 529 aa11.72□□□□□ -0.53
PTPDC1-201ENST00000288976 TRAK1Q9UPV9 953 aa11.71□□□□□ -0.54
PTPDC1-201ENST00000288976 DCCP43146 1447 aa11.71□□□□□ -0.54
PTPDC1-201ENST00000288976 XIRP1Q702N8 1843 aaKnown RBP11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 KIF7Q2M1P5 1343 aa11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 WASHC2AQ641Q2 1341 aa11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 ANKARQ7Z5J8 1434 aa11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 ADGRL3Q9HAR2 1447 aa11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 EVC2Q86UK5 1308 aa11.7□□□□□ -0.54
PTPDC1-201ENST00000288976 SLC26A8Q96RN1 970 aa11.69□□□□□ -0.54
PTPDC1-201ENST00000288976 AMOTL2Q9Y2J4 779 aa11.69□□□□□ -0.54
PTPDC1-201ENST00000288976 PRAM1Q96QH2 718 aa11.69□□□□□ -0.54
PTPDC1-201ENST00000288976 BCL11AQ9H165 835 aa11.69□□□□□ -0.54
PTPDC1-201ENST00000288976 ATAD2Q6PL18 1390 aa11.68□□□□□ -0.54
PTPDC1-201ENST00000288976 PLEKHH1Q9ULM0 1364 aa11.68□□□□□ -0.54
PTPDC1-201ENST00000288976 AKAP12Q02952 1782 aa11.68□□□□□ -0.54
PTPDC1-201ENST00000288976 PLEKHG5O94827 1062 aa11.68□□□□□ -0.54
PTPDC1-201ENST00000288976 POGKQ9P215 609 aa11.68□□□□□ -0.54
PTPDC1-201ENST00000288976 HSPA2P54652 639 aa11.67□□□□□ -0.54
PTPDC1-201ENST00000288976 SENP3Q9H4L4 574 aaPredicted RBP11.67□□□□□ -0.54
PTPDC1-201ENST00000288976 ATP7BP35670 1465 aa11.67□□□□□ -0.54
PTPDC1-201ENST00000288976 KIF1AQ12756 1690 aa11.67□□□□□ -0.54
PTPDC1-201ENST00000288976 MON2Q7Z3U7 1717 aa11.67□□□□□ -0.54
PTPDC1-201ENST00000288976 STK26Q9P289 416 aa11.66□□□□□ -0.54
PTPDC1-201ENST00000288976 NRKQ7Z2Y5 1582 aa11.65□□□□□ -0.54
PTPDC1-201ENST00000288976 LRRC7Q96NW7 1537 aa11.65□□□□□ -0.54
PTPDC1-201ENST00000288976 C11orf95C9JLR9 678 aaPredicted RBP11.65□□□□□ -0.54
PTPDC1-201ENST00000288976 LTBP4Q8N2S1 1624 aa11.65□□□□□ -0.55
PTPDC1-201ENST00000288976 ANKRD26Q9UPS8 1709 aa11.64□□□□□ -0.55
PTPDC1-201ENST00000288976 IQSEC2Q5JU85 1478 aa11.64□□□□□ -0.55
PTPDC1-201ENST00000288976 USP54Q70EL1 1684 aa11.64□□□□□ -0.55
PTPDC1-201ENST00000288976 WASLO00401 505 aaPredicted RBP11.63□□□□□ -0.55
PTPDC1-201ENST00000288976 KIF20BQ96Q89 1820 aa11.62□□□□□ -0.55
PTPDC1-201ENST00000288976 WAPLQ7Z5K2 1190 aa11.62□□□□□ -0.55
PTPDC1-201ENST00000288976 HIRIP3Q9BW71 556 aaPredicted RBP11.62□□□□□ -0.55
PTPDC1-201ENST00000288976 KTN1Q86UP2 1357 aaKnown RBP11.61□□□□□ -0.55
PTPDC1-201ENST00000288976 ANKRD36BQ8N2N9 1353 aa11.61□□□□□ -0.55
PTPDC1-201ENST00000288976 BRD4O60885 1362 aaPredicted RBP11.61□□□□□ -0.55
PTPDC1-201ENST00000288976 NPC1L1Q9UHC9 1359 aa11.61□□□□□ -0.55
PTPDC1-201ENST00000288976 A0A0G2JS52 829 aa11.6□□□□□ -0.55
PTPDC1-201ENST00000288976 CD163L1Q9NR16 1453 aa11.6□□□□□ -0.55
PTPDC1-201ENST00000288976 CDK19Q9BWU1 502 aa11.6□□□□□ -0.55
PTPDC1-201ENST00000288976 MINK1Q8N4C8 1332 aaPredicted RBP11.6□□□□□ -0.55
PTPDC1-201ENST00000288976 CPSF1Q10570 1443 aaKnown RBP11.59□□□□□ -0.55
PTPDC1-201ENST00000288976 PPIP5K1Q6PFW1 1433 aa11.59□□□□□ -0.55
PTPDC1-201ENST00000288976 RGPD8O14715 1765 aaPredicted RBP11.58□□□□□ -0.55
PTPDC1-201ENST00000288976 ERICH6Q7L0X2 663 aa11.58□□□□□ -0.55
PTPDC1-201ENST00000288976 TMEM94Q12767 1356 aa11.58□□□□□ -0.56
PTPDC1-201ENST00000288976 POLR3AO14802 1390 aaPredicted RBP11.58□□□□□ -0.56
PTPDC1-201ENST00000288976 NSD2O96028 1365 aa11.58□□□□□ -0.56
PTPDC1-201ENST00000288976 NEFLP07196 543 aa11.58□□□□□ -0.56
PTPDC1-201ENST00000288976 AEBP2Q6ZN18 517 aaPredicted RBP11.58□□□□□ -0.56
PTPDC1-201ENST00000288976 MSH6P52701 1360 aa11.57□□□□□ -0.56
PTPDC1-201ENST00000288976 PROSER2Q86WR7 435 aaPredicted RBP11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 MST1RQ04912 1400 aa11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 SRPK2P78362 688 aaKnown RBP11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 DIEXFQ68CQ4 756 aaKnown RBP11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 C19orf44Q9H6X5 657 aa11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 SCAF1Q9H7N4 1312 aaKnown RBP11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 SAFB2Q14151 953 aaKnown RBP eCLIP11.56□□□□□ -0.56
PTPDC1-201ENST00000288976 EDC4Q6P2E9 1401 aaKnown RBP11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 PLEKHG3A1L390 1219 aa11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 CABP2Q9NPB3 220 aa11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 ZNF335Q9H4Z2 1342 aaPredicted RBP11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 TRPM3Q9HCF6 1732 aaPredicted RBP11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 NUDT16Q96DE0 195 aaKnown RBP11.55□□□□□ -0.56
PTPDC1-201ENST00000288976 TERF2IPQ9NYB0 399 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 NHSL1Q5SYE7 1610 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 C1orf167Q5SNV9 1468 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 A0A1W2PP64 1363 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 DDX10Q13206 875 aaKnown RBP11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 PRR36Q9H6K5 1346 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 CCDC61Q9Y6R9 512 aa11.54□□□□□ -0.56
PTPDC1-201ENST00000288976 PER1O15534 1290 aaPredicted RBP11.53□□□□□ -0.56
PTPDC1-201ENST00000288976 SSH2Q76I76 1423 aa11.53□□□□□ -0.56
PTPDC1-201ENST00000288976 ZNF692Q9BU19 519 aaPredicted RBP11.52□□□□□ -0.56
PTPDC1-201ENST00000288976 HDGFL2Q7Z4V5 671 aaPredicted RBP11.52□□□□□ -0.57
PTPDC1-201ENST00000288976 NSD3Q9BZ95 1437 aa11.52□□□□□ -0.57
PTPDC1-201ENST00000288976 USP6P35125 1406 aa11.52□□□□□ -0.57
PTPDC1-201ENST00000288976 PANK3Q9H999 370 aa11.52□□□□□ -0.57
PTPDC1-201ENST00000288976 CADPS2Q86UW7 1296 aa11.51□□□□□ -0.57
PTPDC1-201ENST00000288976 PARD3Q8TEW0 1356 aa11.51□□□□□ -0.57
PTPDC1-201ENST00000288976 MARF1Q9Y4F3 1742 aaKnown RBP11.51□□□□□ -0.57
PTPDC1-201ENST00000288976 CGNL1Q0VF96 1302 aa11.51□□□□□ -0.57
PTPDC1-201ENST00000288976 ALS2Q96Q42 1657 aa11.5□□□□□ -0.57
PTPDC1-201ENST00000288976 PIK3C2AO00443 1686 aa11.5□□□□□ -0.57
PTPDC1-201ENST00000288976 AHDC1Q5TGY3 1603 aaPredicted RBP11.5□□□□□ -0.57
PTPDC1-201ENST00000288976 MED1Q15648 1581 aaPredicted RBP11.5□□□□□ -0.57
PTPDC1-201ENST00000288976 ATF3P18847 181 aa11.49□□□□□ -0.57
PTPDC1-201ENST00000288976 RALBP1Q15311 655 aa11.49□□□□□ -0.57
PTPDC1-201ENST00000288976 KNSTRNQ9Y448 316 aa11.49□□□□□ -0.57
PTPDC1-201ENST00000288976 TTC21AQ8NDW8 1320 aa11.49□□□□□ -0.57
PTPDC1-201ENST00000288976 CABP1Q9NZU7 370 aa11.49□□□□□ -0.57
PTPDC1-201ENST00000288976 C14orf37Q86TY3 774 aa11.48□□□□□ -0.57
PTPDC1-201ENST00000288976 SLC12A5Q9H2X9 1139 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms