RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 WAPLQ7Z5K2 1190 aa21.24■□□□□ 0.99
HMGN3-201ENST00000275036 SPATA31A6Q5VVP1 1343 aa21.24■□□□□ 0.99
HMGN3-201ENST00000275036 ORAI2Q96SN7 254 aa21.23■□□□□ 0.99
HMGN3-201ENST00000275036 CFAP70Q5T0N1 1121 aa21.22■□□□□ 0.99
HMGN3-201ENST00000275036 C14orf93Q9H972 538 aaKnown RBP21.22■□□□□ 0.99
HMGN3-201ENST00000275036 PNPLA6Q8IY17 1366 aa21.19■□□□□ 0.98
HMGN3-201ENST00000275036 ADGRB1O14514 1584 aa21.18■□□□□ 0.98
HMGN3-201ENST00000275036 FMN2Q9NZ56 1722 aa21.17■□□□□ 0.98
HMGN3-201ENST00000275036 DHX57Q6P158 1386 aaKnown RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 SOS2Q07890 1332 aaPredicted RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 NUTM2BA6NNL0 878 aaPredicted RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 NUTM2EB1AL46 878 aaPredicted RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 NUTM2AQ8IVF1 878 aaPredicted RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 LRRC59Q96AG4 307 aaKnown RBP21.15■□□□□ 0.98
HMGN3-201ENST00000275036 PXDNQ92626 1479 aa21.13■□□□□ 0.97
HMGN3-201ENST00000275036 NUTM2FA1L443 756 aa21.12■□□□□ 0.97
HMGN3-201ENST00000275036 MEX3CQ5U5Q3 659 aaKnown RBP21.12■□□□□ 0.97
HMGN3-201ENST00000275036 DCAF11Q8TEB1 546 aa21.12■□□□□ 0.97
HMGN3-201ENST00000275036 DLC1Q96QB1 1528 aa21.12■□□□□ 0.97
HMGN3-201ENST00000275036 ESCO1Q5FWF5 840 aa21.11■□□□□ 0.97
HMGN3-201ENST00000275036 SIRT1Q96EB6 747 aa21.11■□□□□ 0.97
HMGN3-201ENST00000275036 KDM2AQ9Y2K7 1162 aa21.11■□□□□ 0.97
HMGN3-201ENST00000275036 COL22A1Q8NFW1 1626 aaPredicted RBP21.1■□□□□ 0.97
HMGN3-201ENST00000275036 RGPD8O14715 1765 aaPredicted RBP21.1■□□□□ 0.97
HMGN3-201ENST00000275036 PRAM1Q96QH2 718 aa21.08■□□□□ 0.97
HMGN3-201ENST00000275036 XPCQ01831 940 aaPredicted RBP21.07■□□□□ 0.96
HMGN3-201ENST00000275036 SAFB2Q14151 953 aaKnown RBP eCLIP21.07■□□□□ 0.96
HMGN3-201ENST00000275036 ADGRB2O60241 1585 aa21.06■□□□□ 0.96
HMGN3-201ENST00000275036 FOXO3O43524 673 aa21.06■□□□□ 0.96
HMGN3-201ENST00000275036 USP32Q8NFA0 1604 aa21.06■□□□□ 0.96
HMGN3-201ENST00000275036 KIF1AQ12756 1690 aa21.05■□□□□ 0.96
HMGN3-201ENST00000275036 NPHP3Q7Z494 1330 aa21.05■□□□□ 0.96
HMGN3-201ENST00000275036 AFF2P51816 1311 aa21.04■□□□□ 0.96
HMGN3-201ENST00000275036 ZNF772Q68DY9 489 aaPredicted RBP21.04■□□□□ 0.96
HMGN3-201ENST00000275036 STAC3Q96MF2 364 aa21.03■□□□□ 0.96
HMGN3-201ENST00000275036 TRAK1Q9UPV9 953 aa21.03■□□□□ 0.96
HMGN3-201ENST00000275036 ARHGEF28Q8N1W1 1705 aaKnown RBP21.02■□□□□ 0.96
HMGN3-201ENST00000275036 C8orf37Q96NL8 207 aa21.02■□□□□ 0.96
HMGN3-201ENST00000275036 ADAMTS2O95450 1211 aa21.01■□□□□ 0.95
HMGN3-201ENST00000275036 POGKQ9P215 609 aa20.99■□□□□ 0.95
HMGN3-201ENST00000275036 KIAA1210Q9ULL0 1709 aa20.98■□□□□ 0.95
HMGN3-201ENST00000275036 HIRIP3Q9BW71 556 aaPredicted RBP20.98■□□□□ 0.95
HMGN3-201ENST00000275036 ANKARQ7Z5J8 1434 aa20.96■□□□□ 0.95
HMGN3-201ENST00000275036 MARF1Q9Y4F3 1742 aaKnown RBP20.96■□□□□ 0.95
HMGN3-201ENST00000275036 SIN3AQ96ST3 1273 aa20.96■□□□□ 0.95
HMGN3-201ENST00000275036 PHF8Q9UPP1 1060 aa20.96■□□□□ 0.95
HMGN3-201ENST00000275036 MINK1Q8N4C8 1332 aaPredicted RBP20.96■□□□□ 0.95
HMGN3-201ENST00000275036 PRR36Q9H6K5 1346 aa20.96■□□□□ 0.95
HMGN3-201ENST00000275036 SPATA31A3Q5VYP0 1347 aa20.95■□□□□ 0.94
HMGN3-201ENST00000275036 RXRBP28702 533 aa20.94■□□□□ 0.94
HMGN3-201ENST00000275036 KRT28Q7Z3Y7 464 aa20.94■□□□□ 0.94
HMGN3-201ENST00000275036 TULP4Q9NRJ4 1543 aa20.94■□□□□ 0.94
HMGN3-201ENST00000275036 NGLY1Q96IV0 654 aa20.93■□□□□ 0.94
HMGN3-201ENST00000275036 CDK12Q9NYV4 1490 aaPredicted RBP20.93■□□□□ 0.94
HMGN3-201ENST00000275036 RGS12O14924 1447 aa20.92■□□□□ 0.94
HMGN3-201ENST00000275036 TNS3Q68CZ2 1445 aa20.92■□□□□ 0.94
HMGN3-201ENST00000275036 TRIM26Q12899 539 aaPredicted RBP20.91■□□□□ 0.94
HMGN3-201ENST00000275036 NBPF1Q3BBV0 1214 aa20.91■□□□□ 0.94
HMGN3-201ENST00000275036 PMFBP1Q8TBY8 1022 aa20.91■□□□□ 0.94
HMGN3-201ENST00000275036 ABCA3Q99758 1704 aa20.91■□□□□ 0.94
HMGN3-201ENST00000275036 QTRT2Q9H974 415 aaKnown RBP20.91■□□□□ 0.94
HMGN3-201ENST00000275036 TRPM3Q9HCF6 1732 aaPredicted RBP20.91■□□□□ 0.94
HMGN3-201ENST00000275036 FNBP4Q8N3X1 1017 aaPredicted RBP20.9■□□□□ 0.94
HMGN3-201ENST00000275036 L3MBTL2Q969R5 705 aa20.9■□□□□ 0.94
HMGN3-201ENST00000275036 BCL9LQ86UU0 1499 aa20.89■□□□□ 0.94
HMGN3-201ENST00000275036 WASLO00401 505 aaPredicted RBP20.89■□□□□ 0.93
HMGN3-201ENST00000275036 ATP7BP35670 1465 aa20.88■□□□□ 0.93
HMGN3-201ENST00000275036 USP21Q9UK80 565 aa20.88■□□□□ 0.93
HMGN3-201ENST00000275036 ATRNO75882 1429 aa20.87■□□□□ 0.93
HMGN3-201ENST00000275036 SBNO1A3KN83 1393 aa20.87■□□□□ 0.93
HMGN3-201ENST00000275036 NEUROD1Q13562 356 aa20.87■□□□□ 0.93
HMGN3-201ENST00000275036 RBM6P78332 1123 aaKnown RBP20.86■□□□□ 0.93
HMGN3-201ENST00000275036 ALS2Q96Q42 1657 aa20.86■□□□□ 0.93
HMGN3-201ENST00000275036 CABLES1Q8TDN4 633 aa20.85■□□□□ 0.93
HMGN3-201ENST00000275036 TOPAZ1Q8N9V7 1692 aa20.85■□□□□ 0.93
HMGN3-201ENST00000275036 TRPM1Q7Z4N2 1603 aa20.85■□□□□ 0.93
HMGN3-201ENST00000275036 EIF3AQ14152 1382 aaKnown RBP20.85■□□□□ 0.93
HMGN3-201ENST00000275036 SLIT2O94813 1529 aa20.84■□□□□ 0.93
HMGN3-201ENST00000275036 PSME1Q06323 249 aa20.84■□□□□ 0.93
HMGN3-201ENST00000275036 ITSN1Q15811 1721 aa20.84■□□□□ 0.93
HMGN3-201ENST00000275036 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.84■□□□□ 0.93
HMGN3-201ENST00000275036 UPF1Q92900 1129 aaKnown RBP eCLIP20.82■□□□□ 0.92
HMGN3-201ENST00000275036 TRPC5Q9UL62 973 aaPredicted RBP20.82■□□□□ 0.92
HMGN3-201ENST00000275036 CRYBG1Q9Y4K1 1723 aa20.81■□□□□ 0.92
HMGN3-201ENST00000275036 PLCH1Q4KWH8 1693 aa20.81■□□□□ 0.92
HMGN3-201ENST00000275036 PLEKHG5O94827 1062 aa20.81■□□□□ 0.92
HMGN3-201ENST00000275036 ARHGEF10O15013 1369 aa20.81■□□□□ 0.92
HMGN3-201ENST00000275036 NUDT16Q96DE0 195 aaKnown RBP20.8■□□□□ 0.92
HMGN3-201ENST00000275036 CDK19Q9BWU1 502 aa20.8■□□□□ 0.92
HMGN3-201ENST00000275036 LMOD2Q6P5Q4 547 aa20.79■□□□□ 0.92
HMGN3-201ENST00000275036 QRICH2Q9H0J4 1663 aa20.79■□□□□ 0.92
HMGN3-201ENST00000275036 GLI3P10071 1580 aa20.78■□□□□ 0.92
HMGN3-201ENST00000275036 GPRASP1Q5JY77 1395 aa20.77■□□□□ 0.92
HMGN3-201ENST00000275036 NBPF8Q3BBV2 869 aa20.75■□□□□ 0.91
HMGN3-201ENST00000275036 NGDNQ8NEJ9 315 aaKnown RBP20.75■□□□□ 0.91
HMGN3-201ENST00000275036 NWD2Q9ULI1 1742 aa20.75■□□□□ 0.91
HMGN3-201ENST00000275036 CENPJQ9HC77 1338 aaPredicted RBP20.75■□□□□ 0.91
HMGN3-201ENST00000275036 RALGAPBQ86X10 1494 aa20.75■□□□□ 0.91
HMGN3-201ENST00000275036 UNC5CLQ8IV45 518 aa20.74■□□□□ 0.91
HMGN3-201ENST00000275036 POLR3AO14802 1390 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms