RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TET3O43151 1660 aa21.49■■□□□ 1.03
VPS54-201ENST00000272322 KDM2BQ8NHM5 1336 aa21.48■■□□□ 1.03
VPS54-201ENST00000272322 CABP1Q9NZU7 370 aa21.47■■□□□ 1.03
VPS54-201ENST00000272322 ABCA6Q8N139 1617 aa21.47■■□□□ 1.03
VPS54-201ENST00000272322 RNF17Q9BXT8 1623 aaKnown RBP21.47■■□□□ 1.03
VPS54-201ENST00000272322 IQGAP1P46940 1657 aa21.46■■□□□ 1.03
VPS54-201ENST00000272322 SLC24A1O60721 1099 aa21.46■■□□□ 1.03
VPS54-201ENST00000272322 YEATS2Q9ULM3 1422 aa21.45■■□□□ 1.02
VPS54-201ENST00000272322 ELL2O00472 640 aaPredicted RBP21.45■■□□□ 1.02
VPS54-201ENST00000272322 SOX12O15370 315 aa21.45■■□□□ 1.02
VPS54-201ENST00000272322 NKTRP30414 1462 aaKnown RBP21.45■■□□□ 1.02
VPS54-201ENST00000272322 INO80Q9ULG1 1556 aaPredicted RBP21.45■■□□□ 1.02
VPS54-201ENST00000272322 PPRC1Q5VV67 1664 aaKnown RBP21.45■■□□□ 1.02
VPS54-201ENST00000272322 TRMT2AQ8IZ69 625 aaKnown RBP21.45■■□□□ 1.02
VPS54-201ENST00000272322 LAMC1P11047 1609 aa21.44■■□□□ 1.02
VPS54-201ENST00000272322 KIDINS220Q9ULH0 1771 aa21.44■■□□□ 1.02
VPS54-201ENST00000272322 CEP152O94986 1710 aa21.44■■□□□ 1.02
VPS54-201ENST00000272322 RARSP54136 660 aaKnown RBP21.43■■□□□ 1.02
VPS54-201ENST00000272322 NCKAP5LQ9HCH0 1330 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 MAP3K4Q9Y6R4 1608 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 HMOX1P09601 288 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 SYNMO15061 1565 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 FAM161AQ3B820 660 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 EFCAB6Q5THR3 1501 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 MROH1Q8NDA8 1641 aa21.43■■□□□ 1.02
VPS54-201ENST00000272322 ABCA9Q8IUA7 1624 aa21.42■■□□□ 1.02
VPS54-201ENST00000272322 POGZQ7Z3K3 1410 aa21.42■■□□□ 1.02
VPS54-201ENST00000272322 SEC24BO95487 1268 aa21.42■■□□□ 1.02
VPS54-201ENST00000272322 C8orf34Q49A92 452 aa21.42■■□□□ 1.02
VPS54-201ENST00000272322 PCDHB15Q9Y5E8 787 aa21.42■■□□□ 1.02
VPS54-201ENST00000272322 FTSJ3Q8IY81 847 aaKnown RBP21.41■■□□□ 1.02
VPS54-201ENST00000272322 THUMPD2Q9BTF0 503 aaKnown RBP21.41■■□□□ 1.02
VPS54-201ENST00000272322 EXOSC9Q06265 439 aaKnown RBP21.41■■□□□ 1.02
VPS54-201ENST00000272322 CDK19Q9BWU1 502 aa21.41■■□□□ 1.02
VPS54-201ENST00000272322 MROH2AA6NES4 1674 aa21.4■■□□□ 1.02
VPS54-201ENST00000272322 SPRYD3Q8NCJ5 442 aa21.4■■□□□ 1.02
VPS54-201ENST00000272322 MAPK8IP3Q9UPT6 1336 aa21.4■■□□□ 1.02
VPS54-201ENST00000272322 KDM5AP29375 1690 aaKnown RBP21.4■■□□□ 1.02
VPS54-201ENST00000272322 SMC4Q9NTJ3 1288 aa21.39■■□□□ 1.02
VPS54-201ENST00000272322 ZRANB1Q9UGI0 708 aa21.39■■□□□ 1.01
VPS54-201ENST00000272322 FYB1O15117 783 aa21.39■■□□□ 1.01
VPS54-201ENST00000272322 NPC1L1Q9UHC9 1359 aa21.38■■□□□ 1.01
VPS54-201ENST00000272322 RTN4Q9NQC3 1192 aaKnown RBP21.38■■□□□ 1.01
VPS54-201ENST00000272322 RIPK4P57078 832 aa21.37■■□□□ 1.01
VPS54-201ENST00000272322 KIF1BO60333 1816 aa21.37■■□□□ 1.01
VPS54-201ENST00000272322 POLR3AO14802 1390 aaPredicted RBP21.37■■□□□ 1.01
VPS54-201ENST00000272322 A0A1W2PP64 1363 aa21.37■■□□□ 1.01
VPS54-201ENST00000272322 MYOM1P52179 1685 aa21.36■■□□□ 1.01
VPS54-201ENST00000272322 ARAP3Q8WWN8 1544 aa21.36■■□□□ 1.01
VPS54-201ENST00000272322 VWDEQ8N2E2 1590 aa21.36■■□□□ 1.01
VPS54-201ENST00000272322 DEPDC5O75140 1603 aa21.36■■□□□ 1.01
VPS54-201ENST00000272322 MYOM2P54296 1465 aa21.35■■□□□ 1.01
VPS54-201ENST00000272322 TXNDC2Q86VQ3 553 aa21.35■■□□□ 1.01
VPS54-201ENST00000272322 ITPRIPQ8IWB1 547 aa21.35■■□□□ 1.01
VPS54-201ENST00000272322 SLKQ9H2G2 1235 aaPredicted RBP21.34■■□□□ 1.01
VPS54-201ENST00000272322 TERF2IPQ9NYB0 399 aa21.34■■□□□ 1.01
VPS54-201ENST00000272322 RPGRIP1LQ68CZ1 1315 aa21.34■■□□□ 1.01
VPS54-201ENST00000272322 TMPOP42166 694 aaKnown RBP21.32■■□□□ 1
VPS54-201ENST00000272322 SLC52A1Q9NWF4 448 aa21.32■■□□□ 1
VPS54-201ENST00000272322 INSRP06213 1382 aa21.32■■□□□ 1
VPS54-201ENST00000272322 ESF1Q9H501 851 aaKnown RBP21.32■■□□□ 1
VPS54-201ENST00000272322 HDGFL2Q7Z4V5 671 aaPredicted RBP21.31■■□□□ 1
VPS54-201ENST00000272322 MYH16Q9H6N6 1097 aa21.31■■□□□ 1
VPS54-201ENST00000272322 PDE3AQ14432 1141 aa21.31■■□□□ 1
VPS54-201ENST00000272322 FRMPD1Q5SYB0 1578 aa21.31■■□□□ 1
VPS54-201ENST00000272322 SSH1Q8WYL5 1049 aa21.3■■□□□ 1
VPS54-201ENST00000272322 PDZRN3Q9UPQ7 1066 aa21.3■■□□□ 1
VPS54-201ENST00000272322 DDRGK1Q96HY6 314 aa21.3■■□□□ 1
VPS54-201ENST00000272322 EMILIN1Q9Y6C2 1016 aa21.3■■□□□ 1
VPS54-201ENST00000272322 DIAPH1O60610 1272 aaKnown RBP21.3■■□□□ 1
VPS54-201ENST00000272322 RRS1Q15050 365 aaKnown RBP21.3■■□□□ 1
VPS54-201ENST00000272322 PLEKHG5O94827 1062 aa21.29■■□□□ 1
VPS54-201ENST00000272322 ARXQ96QS3 562 aa21.29■■□□□ 1
VPS54-201ENST00000272322 PRKAR2BP31323 418 aa21.29■■□□□ 1
VPS54-201ENST00000272322 ABCC3O15438 1527 aa21.28■■□□□ 1
VPS54-201ENST00000272322 ANKRD36BQ8N2N9 1353 aa21.28■■□□□ 1
VPS54-201ENST00000272322 NOB1Q9ULX3 412 aaKnown RBP21.28■■□□□ 1
VPS54-201ENST00000272322 ADGRB3O60242 1522 aa21.27■■□□□ 1
VPS54-201ENST00000272322 NME9Q86XW9 330 aa21.27■■□□□ 1
VPS54-201ENST00000272322 MLH3Q9UHC1 1453 aa21.27■■□□□ 1
VPS54-201ENST00000272322 SBNO2Q9Y2G9 1366 aa21.27■■□□□ 1
VPS54-201ENST00000272322 WDR63Q8IWG1 891 aa21.27■□□□□ 0.99
VPS54-201ENST00000272322 ZKSCAN2Q63HK3 967 aa21.26■□□□□ 0.99
VPS54-201ENST00000272322 TRIM35Q9UPQ4 493 aa21.26■□□□□ 0.99
VPS54-201ENST00000272322 NFKBIBQ15653 356 aa21.26■□□□□ 0.99
VPS54-201ENST00000272322 DZIP1LQ8IYY4 767 aaKnown RBP21.26■□□□□ 0.99
VPS54-201ENST00000272322 PHACTR3Q96KR7 559 aa21.25■□□□□ 0.99
VPS54-201ENST00000272322 C1orf115Q9H7X2 142 aa21.25■□□□□ 0.99
VPS54-201ENST00000272322 DCTN1Q14203 1278 aa21.25■□□□□ 0.99
VPS54-201ENST00000272322 TRIM27P14373 513 aa21.24■□□□□ 0.99
VPS54-201ENST00000272322 ADGRB1O14514 1584 aa21.24■□□□□ 0.99
VPS54-201ENST00000272322 FRAT2O75474 233 aaPredicted RBP21.24■□□□□ 0.99
VPS54-201ENST00000272322 NRXN1Q9ULB1 1477 aa21.22■□□□□ 0.99
VPS54-201ENST00000272322 FAM83GA6ND36 823 aa21.21■□□□□ 0.99
VPS54-201ENST00000272322 HECW2Q9P2P5 1572 aa21.21■□□□□ 0.99
VPS54-201ENST00000272322 TMEM57Q8N5G2 664 aa21.21■□□□□ 0.99
VPS54-201ENST00000272322 TULP4Q9NRJ4 1543 aa21.21■□□□□ 0.99
VPS54-201ENST00000272322 MFAP1P55081 439 aaKnown RBP21.2■□□□□ 0.98
VPS54-201ENST00000272322 MVPQ14764 893 aaKnown RBP21.2■□□□□ 0.98
VPS54-201ENST00000272322 QRICH2Q9H0J4 1663 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms