RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 MSH5O43196 834 aa17.12■□□□□ 0.33
CPSF6-201ENST00000266679 PIK3C2GO75747 1445 aa17.12■□□□□ 0.33
CPSF6-201ENST00000266679 EXOC6Q8TAG9 804 aa17.11■□□□□ 0.33
CPSF6-201ENST00000266679 NPC1L1Q9UHC9 1359 aa17.1■□□□□ 0.33
CPSF6-201ENST00000266679 PIK3C2BO00750 1634 aa17.09■□□□□ 0.33
CPSF6-201ENST00000266679 CENPJQ9HC77 1338 aaPredicted RBP17.08■□□□□ 0.32
CPSF6-201ENST00000266679 PLEKHH1Q9ULM0 1364 aa17.07■□□□□ 0.32
CPSF6-201ENST00000266679 ADGRB1O14514 1584 aa17.07■□□□□ 0.32
CPSF6-201ENST00000266679 SLC24A1O60721 1099 aa17.07■□□□□ 0.32
CPSF6-201ENST00000266679 TRAK1Q9UPV9 953 aa17.07■□□□□ 0.32
CPSF6-201ENST00000266679 THEMISQ8N1K5 641 aaPredicted RBP17.06■□□□□ 0.32
CPSF6-201ENST00000266679 SBNO2Q9Y2G9 1366 aa17.06■□□□□ 0.32
CPSF6-201ENST00000266679 CARD14Q9BXL6 1004 aa17.05■□□□□ 0.32
CPSF6-201ENST00000266679 ARHGAP31Q2M1Z3 1444 aa17.05■□□□□ 0.32
CPSF6-201ENST00000266679 ANKLE2Q86XL3 938 aa17.05■□□□□ 0.32
CPSF6-201ENST00000266679 NPHP4O75161 1426 aaPredicted RBP17.04■□□□□ 0.32
CPSF6-201ENST00000266679 PLIN1O60240 522 aa17.04■□□□□ 0.32
CPSF6-201ENST00000266679 C14orf93Q9H972 538 aaKnown RBP17.04■□□□□ 0.32
CPSF6-201ENST00000266679 STRCP1A6NGW2 1772 aa17.04■□□□□ 0.32
CPSF6-201ENST00000266679 TMEM132EQ6IEE7 984 aa17.04■□□□□ 0.32
CPSF6-201ENST00000266679 CCDC146Q8IYE0 955 aa17.03■□□□□ 0.32
CPSF6-201ENST00000266679 NEXMIFQ5QGS0 1516 aa17.03■□□□□ 0.32
CPSF6-201ENST00000266679 NUTM2DQ5VT03 806 aaPredicted RBP17.02■□□□□ 0.32
CPSF6-201ENST00000266679 ARHGEF28Q8N1W1 1705 aaKnown RBP17.02■□□□□ 0.31
CPSF6-201ENST00000266679 RPGRIP1LQ68CZ1 1315 aa17.02■□□□□ 0.31
CPSF6-201ENST00000266679 MED14O60244 1454 aa17.01■□□□□ 0.31
CPSF6-201ENST00000266679 IQSEC2Q5JU85 1478 aa17.01■□□□□ 0.31
CPSF6-201ENST00000266679 NSD3Q9BZ95 1437 aa17.01■□□□□ 0.31
CPSF6-201ENST00000266679 MYO5BQ9ULV0 1848 aa17.01■□□□□ 0.31
CPSF6-201ENST00000266679 ERICH6Q7L0X2 663 aa17■□□□□ 0.31
CPSF6-201ENST00000266679 CRBNQ96SW2 442 aa16.99■□□□□ 0.31
CPSF6-201ENST00000266679 ZNF521Q96K83 1311 aa16.99■□□□□ 0.31
CPSF6-201ENST00000266679 LTKP29376 864 aa16.98■□□□□ 0.31
CPSF6-201ENST00000266679 DUSP27Q5VZP5 1158 aa16.98■□□□□ 0.31
CPSF6-201ENST00000266679 SLIT1O75093 1534 aa16.97■□□□□ 0.31
CPSF6-201ENST00000266679 UBAP1LF5GYI3 381 aa16.97■□□□□ 0.31
CPSF6-201ENST00000266679 GOLGA2Q08379 1002 aa16.97■□□□□ 0.31
CPSF6-201ENST00000266679 ARHGAP23Q9P227 1491 aa16.97■□□□□ 0.31
CPSF6-201ENST00000266679 SLC12A5Q9H2X9 1139 aa16.96■□□□□ 0.31
CPSF6-201ENST00000266679 SHPRHQ149N8 1683 aa16.96■□□□□ 0.31
CPSF6-201ENST00000266679 IDI1Q13907 227 aa16.96■□□□□ 0.3
CPSF6-201ENST00000266679 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.3
CPSF6-201ENST00000266679 CPS1P31327 1500 aa16.96■□□□□ 0.3
CPSF6-201ENST00000266679 TULP4Q9NRJ4 1543 aa16.96■□□□□ 0.3
CPSF6-201ENST00000266679 USP32Q8NFA0 1604 aa16.95■□□□□ 0.3
CPSF6-201ENST00000266679 APAF1O14727 1248 aa16.95■□□□□ 0.3
CPSF6-201ENST00000266679 STAG3Q9UJ98 1225 aa16.95■□□□□ 0.3
CPSF6-201ENST00000266679 VGFO15240 615 aaPredicted RBP16.94■□□□□ 0.3
CPSF6-201ENST00000266679 C20orf194Q5TEA3 1177 aa16.94■□□□□ 0.3
CPSF6-201ENST00000266679 TXNDC2Q86VQ3 553 aa16.94■□□□□ 0.3
CPSF6-201ENST00000266679 MORC1Q86VD1 984 aa16.93■□□□□ 0.3
CPSF6-201ENST00000266679 TNNT2P45379 298 aaPredicted RBP16.93■□□□□ 0.3
CPSF6-201ENST00000266679 SLFN5Q08AF3 891 aa16.93■□□□□ 0.3
CPSF6-201ENST00000266679 POLR3AO14802 1390 aaPredicted RBP16.92■□□□□ 0.3
CPSF6-201ENST00000266679 TMEM2Q9UHN6 1383 aa16.92■□□□□ 0.3
CPSF6-201ENST00000266679 TMEM131LA2VDJ0 1609 aa16.92■□□□□ 0.3
CPSF6-201ENST00000266679 XIRP1Q702N8 1843 aaKnown RBP16.9■□□□□ 0.3
CPSF6-201ENST00000266679 ALKQ9UM73 1620 aa16.9■□□□□ 0.3
CPSF6-201ENST00000266679 EVC2Q86UK5 1308 aa16.9■□□□□ 0.3
CPSF6-201ENST00000266679 PIP4K2BP78356 416 aa16.9■□□□□ 0.3
CPSF6-201ENST00000266679 SPINK5Q9NQ38 1064 aaPredicted RBP16.9■□□□□ 0.3
CPSF6-201ENST00000266679 SAFB2Q14151 953 aaKnown RBP eCLIP16.89■□□□□ 0.29
CPSF6-201ENST00000266679 LRRC7Q96NW7 1537 aa16.89■□□□□ 0.29
CPSF6-201ENST00000266679 TCERG1O14776 1098 aaKnown RBP16.89■□□□□ 0.29
CPSF6-201ENST00000266679 NKTRP30414 1462 aaKnown RBP16.89■□□□□ 0.29
CPSF6-201ENST00000266679 EID1Q9Y6B2 187 aa16.88■□□□□ 0.29
CPSF6-201ENST00000266679 TRMT2AQ8IZ69 625 aaKnown RBP16.88■□□□□ 0.29
CPSF6-201ENST00000266679 SLC52A1Q9NWF4 448 aa16.88■□□□□ 0.29
CPSF6-201ENST00000266679 STK26Q9P289 416 aa16.88■□□□□ 0.29
CPSF6-201ENST00000266679 CABP2Q9NPB3 220 aa16.87■□□□□ 0.29
CPSF6-201ENST00000266679 ZFYVE9O95405 1425 aa16.87■□□□□ 0.29
CPSF6-201ENST00000266679 CGNL1Q0VF96 1302 aa16.87■□□□□ 0.29
CPSF6-201ENST00000266679 ANP32AP39687 249 aaKnown RBP16.86■□□□□ 0.29
CPSF6-201ENST00000266679 ANKRD36BQ8N2N9 1353 aa16.86■□□□□ 0.29
CPSF6-201ENST00000266679 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.86■□□□□ 0.29
CPSF6-201ENST00000266679 E9PSI1 815 aa16.85■□□□□ 0.29
CPSF6-201ENST00000266679 SLC26A8Q96RN1 970 aa16.85■□□□□ 0.29
CPSF6-201ENST00000266679 SKAP1Q86WV1 359 aa16.85■□□□□ 0.29
CPSF6-201ENST00000266679 NOP58Q9Y2X3 529 aaKnown RBP16.85■□□□□ 0.29
CPSF6-201ENST00000266679 PUS7Q96PZ0 661 aaKnown RBP16.83■□□□□ 0.28
CPSF6-201ENST00000266679 MTHFSP49914 203 aa16.82■□□□□ 0.28
CPSF6-201ENST00000266679 NGEFQ8N5V2 710 aa16.82■□□□□ 0.28
CPSF6-201ENST00000266679 MS4A1P11836 297 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 PDE4AP27815 886 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 RBM33Q96EV2 1170 aaKnown RBP16.81■□□□□ 0.28
CPSF6-201ENST00000266679 RRP7AQ9Y3A4 280 aaKnown RBP16.81■□□□□ 0.28
CPSF6-201ENST00000266679 NSD2O96028 1365 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 RIMS2Q9UQ26 1411 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 TOM1O60784 492 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 BCAR3O75815 825 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 PAK3O75914 559 aaPredicted RBP16.81■□□□□ 0.28
CPSF6-201ENST00000266679 HSPA1LP34931 641 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 SRPK2P78362 688 aaKnown RBP16.81■□□□□ 0.28
CPSF6-201ENST00000266679 CFAP53Q96M91 514 aa16.81■□□□□ 0.28
CPSF6-201ENST00000266679 A0A1W2PP64 1363 aa16.8■□□□□ 0.28
CPSF6-201ENST00000266679 MINK1Q8N4C8 1332 aaPredicted RBP16.8■□□□□ 0.28
CPSF6-201ENST00000266679 KDM2BQ8NHM5 1336 aa16.8■□□□□ 0.28
CPSF6-201ENST00000266679 NEUROD2Q15784 382 aa16.8■□□□□ 0.28
CPSF6-201ENST00000266679 NPM2Q86SE8 214 aaKnown RBP16.8■□□□□ 0.28
CPSF6-201ENST00000266679 WWC1Q8IX03 1113 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms