RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 ZNF335Q9H4Z2 1342 aaPredicted RBP38.36■■■■□ 3.73
SMARCD3-201ENST00000262188 PTCH1Q13635 1447 aa38.36■■■■□ 3.73
SMARCD3-201ENST00000262188 NWD1Q149M9 1564 aa38.35■■■■□ 3.73
SMARCD3-201ENST00000262188 KIF7Q2M1P5 1343 aa38.35■■■■□ 3.73
SMARCD3-201ENST00000262188 SIRT1Q96EB6 747 aa38.33■■■■□ 3.73
SMARCD3-201ENST00000262188 TMF1P82094 1093 aa38.31■■■■□ 3.72
SMARCD3-201ENST00000262188 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.31■■■■□ 3.72
SMARCD3-201ENST00000262188 DMRT2Q9Y5R5 561 aa38.31■■■■□ 3.72
SMARCD3-201ENST00000262188 SBNO2Q9Y2G9 1366 aa38.3■■■■□ 3.72
SMARCD3-201ENST00000262188 CCDC7Q96M83 1385 aa38.29■■■■□ 3.72
SMARCD3-201ENST00000262188 TULP4Q9NRJ4 1543 aa38.29■■■■□ 3.72
SMARCD3-201ENST00000262188 PROSER2Q86WR7 435 aaPredicted RBP38.26■■■■□ 3.71
SMARCD3-201ENST00000262188 CABP2Q9NPB3 220 aa38.22■■■■□ 3.71
SMARCD3-201ENST00000262188 NKTRP30414 1462 aaKnown RBP38.2■■■■□ 3.71
SMARCD3-201ENST00000262188 DDX10Q13206 875 aaKnown RBP38.19■■■■□ 3.7
SMARCD3-201ENST00000262188 EVC2Q86UK5 1308 aa38.19■■■■□ 3.7
SMARCD3-201ENST00000262188 CDK19Q9BWU1 502 aa38.19■■■■□ 3.7
SMARCD3-201ENST00000262188 NALCNQ8IZF0 1738 aa38.17■■■■□ 3.7
SMARCD3-201ENST00000262188 SRPK2P78362 688 aaKnown RBP38.17■■■■□ 3.7
SMARCD3-201ENST00000262188 TMEM94Q12767 1356 aa38.16■■■■□ 3.7
SMARCD3-201ENST00000262188 NUTM2FA1L443 756 aa38.15■■■■□ 3.7
SMARCD3-201ENST00000262188 C14orf37Q86TY3 774 aa38.15■■■■□ 3.7
SMARCD3-201ENST00000262188 WASLO00401 505 aaPredicted RBP38.14■■■■□ 3.7
SMARCD3-201ENST00000262188 ADGRB2O60241 1585 aa38.1■■■■□ 3.69
SMARCD3-201ENST00000262188 SLC24A1O60721 1099 aa38.09■■■■□ 3.69
SMARCD3-201ENST00000262188 LRRC7Q96NW7 1537 aa38.08■■■■□ 3.69
SMARCD3-201ENST00000262188 ADGRL3Q9HAR2 1447 aa38.08■■■■□ 3.69
SMARCD3-201ENST00000262188 CDCA8Q53HL2 280 aa38.08■■■■□ 3.69
SMARCD3-201ENST00000262188 XIRP1Q702N8 1843 aaKnown RBP38.05■■■■□ 3.68
SMARCD3-201ENST00000262188 PRR36Q9H6K5 1346 aa38.04■■■■□ 3.68
SMARCD3-201ENST00000262188 MYOM1P52179 1685 aa38.03■■■■□ 3.68
SMARCD3-201ENST00000262188 TMC1Q8TDI8 760 aa38.02■■■■□ 3.68
SMARCD3-201ENST00000262188 SLC12A5Q9H2X9 1139 aa38.01■■■■□ 3.68
SMARCD3-201ENST00000262188 NUDT16Q96DE0 195 aaKnown RBP37.99■■■■□ 3.67
SMARCD3-201ENST00000262188 LTBP4Q8N2S1 1624 aa37.98■■■■□ 3.67
SMARCD3-201ENST00000262188 CDC42BPGQ6DT37 1551 aa37.97■■■■□ 3.67
SMARCD3-201ENST00000262188 ATP7BP35670 1465 aa37.96■■■■□ 3.67
SMARCD3-201ENST00000262188 C19orf44Q9H6X5 657 aa37.96■■■■□ 3.67
SMARCD3-201ENST00000262188 USP32Q8NFA0 1604 aa37.95■■■■□ 3.67
SMARCD3-201ENST00000262188 CENPBP07199 599 aaPredicted RBP37.95■■■■□ 3.67
SMARCD3-201ENST00000262188 FMN2Q9NZ56 1722 aa37.94■■■■□ 3.66
SMARCD3-201ENST00000262188 ATAD2Q6PL18 1390 aa37.94■■■■□ 3.66
SMARCD3-201ENST00000262188 CABP1Q9NZU7 370 aa37.93■■■■□ 3.66
SMARCD3-201ENST00000262188 RGPD8O14715 1765 aaPredicted RBP37.93■■■■□ 3.66
SMARCD3-201ENST00000262188 PUS7Q96PZ0 661 aaKnown RBP37.93■■■■□ 3.66
SMARCD3-201ENST00000262188 PANK3Q9H999 370 aa37.93■■■■□ 3.66
SMARCD3-201ENST00000262188 DIEXFQ68CQ4 756 aaKnown RBP37.91■■■■□ 3.66
SMARCD3-201ENST00000262188 NCOA3Q9Y6Q9 1424 aa37.9■■■■□ 3.66
SMARCD3-201ENST00000262188 PPIP5K1Q6PFW1 1433 aa37.89■■■■□ 3.66
SMARCD3-201ENST00000262188 MSH6P52701 1360 aa37.88■■■■□ 3.65
SMARCD3-201ENST00000262188 CCDC61Q9Y6R9 512 aa37.88■■■■□ 3.65
SMARCD3-201ENST00000262188 ATF3P18847 181 aa37.86■■■■□ 3.65
SMARCD3-201ENST00000262188 CNGB1Q14028 1251 aaPredicted RBP37.84■■■■□ 3.65
SMARCD3-201ENST00000262188 PMFBP1Q8TBY8 1022 aa37.84■■■■□ 3.65
SMARCD3-201ENST00000262188 TOPAZ1Q8N9V7 1692 aa37.83■■■■□ 3.65
SMARCD3-201ENST00000262188 CD163L1Q9NR16 1453 aa37.81■■■■□ 3.64
SMARCD3-201ENST00000262188 CARD14Q9BXL6 1004 aa37.8■■■■□ 3.64
SMARCD3-201ENST00000262188 GTF3C3Q9Y5Q9 886 aa37.8■■■■□ 3.64
SMARCD3-201ENST00000262188 ANKARQ7Z5J8 1434 aa37.8■■■■□ 3.64
SMARCD3-201ENST00000262188 ORAI2Q96SN7 254 aa37.79■■■■□ 3.64
SMARCD3-201ENST00000262188 A0A1W2PP64 1363 aa37.79■■■■□ 3.64
SMARCD3-201ENST00000262188 DCCP43146 1447 aa37.78■■■■□ 3.64
SMARCD3-201ENST00000262188 MST1RQ04912 1400 aa37.78■■■■□ 3.64
SMARCD3-201ENST00000262188 ESCO1Q5FWF5 840 aa37.77■■■■□ 3.64
SMARCD3-201ENST00000262188 CADPS2Q86UW7 1296 aa37.77■■■■□ 3.64
SMARCD3-201ENST00000262188 C1orf167Q5SNV9 1468 aa37.76■■■■□ 3.63
SMARCD3-201ENST00000262188 ANKRD36BQ8N2N9 1353 aa37.75■■■■□ 3.63
SMARCD3-201ENST00000262188 NINLQ9Y2I6 1382 aa37.75■■■■□ 3.63
SMARCD3-201ENST00000262188 PER1O15534 1290 aaPredicted RBP37.75■■■■□ 3.63
SMARCD3-201ENST00000262188 ITSN1Q15811 1721 aa37.73■■■■□ 3.63
SMARCD3-201ENST00000262188 ACEP12821 1306 aa37.73■■■■□ 3.63
SMARCD3-201ENST00000262188 PLEKHG3A1L390 1219 aa37.71■■■■□ 3.63
SMARCD3-201ENST00000262188 TERF2IPQ9NYB0 399 aa37.71■■■■□ 3.63
SMARCD3-201ENST00000262188 PHF8Q9UPP1 1060 aa37.7■■■■□ 3.63
SMARCD3-201ENST00000262188 NSD3Q9BZ95 1437 aa37.7■■■■□ 3.63
SMARCD3-201ENST00000262188 HDGFL2Q7Z4V5 671 aaPredicted RBP37.69■■■■□ 3.62
SMARCD3-201ENST00000262188 CPSF1Q10570 1443 aaKnown RBP37.68■■■■□ 3.62
SMARCD3-201ENST00000262188 NGDNQ8NEJ9 315 aaKnown RBP37.68■■■■□ 3.62
SMARCD3-201ENST00000262188 SLAIN2Q9P270 581 aa37.66■■■■□ 3.62
SMARCD3-201ENST00000262188 KTN1Q86UP2 1357 aaKnown RBP37.65■■■■□ 3.62
SMARCD3-201ENST00000262188 KNSTRNQ9Y448 316 aa37.65■■■■□ 3.62
SMARCD3-201ENST00000262188 AKAP12Q02952 1782 aa37.63■■■■□ 3.61
SMARCD3-201ENST00000262188 DDX17Q92841 729 aaKnown RBP37.63■■■■□ 3.61
SMARCD3-201ENST00000262188 CC2D1BQ5T0F9 858 aaKnown RBP37.62■■■■□ 3.61
SMARCD3-201ENST00000262188 SUGP2Q8IX01 1082 aaKnown RBP eCLIP37.62■■■■□ 3.61
SMARCD3-201ENST00000262188 POLR3AO14802 1390 aaPredicted RBP37.61■■■■□ 3.61
SMARCD3-201ENST00000262188 FOXO3O43524 673 aa37.61■■■■□ 3.61
SMARCD3-201ENST00000262188 XPCQ01831 940 aaPredicted RBP37.61■■■■□ 3.61
SMARCD3-201ENST00000262188 AMER1Q5JTC6 1135 aaPredicted RBP37.59■■■■□ 3.61
SMARCD3-201ENST00000262188 MON2Q7Z3U7 1717 aa37.58■■■■□ 3.61
SMARCD3-201ENST00000262188 BRINP3Q76B58 766 aa37.57■■■■□ 3.61
SMARCD3-201ENST00000262188 USP6P35125 1406 aa37.56■■■■□ 3.6
SMARCD3-201ENST00000262188 MIER1Q8N108 512 aa37.55■■■■□ 3.6
SMARCD3-201ENST00000262188 ZNF692Q9BU19 519 aaPredicted RBP37.55■■■■□ 3.6
SMARCD3-201ENST00000262188 CERKQ8TCT0 537 aa37.53■■■■□ 3.6
SMARCD3-201ENST00000262188 EDC4Q6P2E9 1401 aaKnown RBP37.52■■■■□ 3.6
SMARCD3-201ENST00000262188 BCL11AQ9H165 835 aa37.51■■■■□ 3.6
SMARCD3-201ENST00000262188 PSME1Q06323 249 aa37.51■■■■□ 3.59
SMARCD3-201ENST00000262188 ZRANB1Q9UGI0 708 aa37.51■■■■□ 3.59
SMARCD3-201ENST00000262188 NRKQ7Z2Y5 1582 aa37.5■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms