RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 SLC24A1O60721 1099 aa24.86■■□□□ 1.57
PDLIM4-201ENST00000253754 STK26Q9P289 416 aa24.86■■□□□ 1.57
PDLIM4-201ENST00000253754 CCDC136Q96JN2 1154 aa24.84■■□□□ 1.57
PDLIM4-201ENST00000253754 UBR1Q8IWV7 1749 aa24.84■■□□□ 1.57
PDLIM4-201ENST00000253754 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.83■■□□□ 1.57
PDLIM4-201ENST00000253754 ALKQ9UM73 1620 aa24.83■■□□□ 1.57
PDLIM4-201ENST00000253754 NLRP1Q9C000 1473 aa24.82■■□□□ 1.56
PDLIM4-201ENST00000253754 QRICH2Q9H0J4 1663 aa24.82■■□□□ 1.56
PDLIM4-201ENST00000253754 HDGFP51858 240 aaKnown RBP24.81■■□□□ 1.56
PDLIM4-201ENST00000253754 PLEKHH1Q9ULM0 1364 aa24.8■■□□□ 1.56
PDLIM4-201ENST00000253754 TMEM2Q9UHN6 1383 aa24.8■■□□□ 1.56
PDLIM4-201ENST00000253754 ARHGEF28Q8N1W1 1705 aaKnown RBP24.79■■□□□ 1.56
PDLIM4-201ENST00000253754 ADAMTSL3P82987 1691 aa24.79■■□□□ 1.56
PDLIM4-201ENST00000253754 EXOC6Q8TAG9 804 aa24.79■■□□□ 1.56
PDLIM4-201ENST00000253754 SLC12A5Q9H2X9 1139 aa24.79■■□□□ 1.56
PDLIM4-201ENST00000253754 SAFB2Q14151 953 aaKnown RBP eCLIP24.78■■□□□ 1.56
PDLIM4-201ENST00000253754 CCDC146Q8IYE0 955 aa24.78■■□□□ 1.56
PDLIM4-201ENST00000253754 YTHDC2Q9H6S0 1430 aaKnown RBP24.77■■□□□ 1.56
PDLIM4-201ENST00000253754 NSD3Q9BZ95 1437 aa24.76■■□□□ 1.55
PDLIM4-201ENST00000253754 PLIN1O60240 522 aa24.75■■□□□ 1.55
PDLIM4-201ENST00000253754 PTPRMP28827 1452 aa24.74■■□□□ 1.55
PDLIM4-201ENST00000253754 KDM4FA0A1W2PPD8 638 aa24.73■■□□□ 1.55
PDLIM4-201ENST00000253754 NRXN3Q9Y4C0 1643 aa24.72■■□□□ 1.55
PDLIM4-201ENST00000253754 LTKP29376 864 aa24.72■■□□□ 1.55
PDLIM4-201ENST00000253754 PRAM1Q96QH2 718 aa24.72■■□□□ 1.55
PDLIM4-201ENST00000253754 TNNT2P45379 298 aaPredicted RBP24.71■■□□□ 1.55
PDLIM4-201ENST00000253754 TXNDC2Q86VQ3 553 aa24.71■■□□□ 1.55
PDLIM4-201ENST00000253754 POGKQ9P215 609 aa24.71■■□□□ 1.55
PDLIM4-201ENST00000253754 SETD1AO15047 1707 aaKnown RBP24.71■■□□□ 1.55
PDLIM4-201ENST00000253754 ZNF521Q96K83 1311 aa24.7■■□□□ 1.55
PDLIM4-201ENST00000253754 TULP4Q9NRJ4 1543 aa24.69■■□□□ 1.54
PDLIM4-201ENST00000253754 THEMISQ8N1K5 641 aaPredicted RBP24.68■■□□□ 1.54
PDLIM4-201ENST00000253754 METP08581 1390 aa24.68■■□□□ 1.54
PDLIM4-201ENST00000253754 EVC2Q86UK5 1308 aa24.68■■□□□ 1.54
PDLIM4-201ENST00000253754 DUSP27Q5VZP5 1158 aa24.68■■□□□ 1.54
PDLIM4-201ENST00000253754 EID1Q9Y6B2 187 aa24.68■■□□□ 1.54
PDLIM4-201ENST00000253754 APAF1O14727 1248 aa24.67■■□□□ 1.54
PDLIM4-201ENST00000253754 MORC1Q86VD1 984 aa24.66■■□□□ 1.54
PDLIM4-201ENST00000253754 CABP2Q9NPB3 220 aa24.66■■□□□ 1.54
PDLIM4-201ENST00000253754 MINK1Q8N4C8 1332 aaPredicted RBP24.66■■□□□ 1.54
PDLIM4-201ENST00000253754 MSH5O43196 834 aa24.65■■□□□ 1.54
PDLIM4-201ENST00000253754 GOLGA2Q08379 1002 aa24.65■■□□□ 1.54
PDLIM4-201ENST00000253754 WAPLQ7Z5K2 1190 aa24.63■■□□□ 1.53
PDLIM4-201ENST00000253754 FANCIQ9NVI1 1328 aa24.63■■□□□ 1.53
PDLIM4-201ENST00000253754 SLIT1O75093 1534 aa24.63■■□□□ 1.53
PDLIM4-201ENST00000253754 PLEKHG1Q9ULL1 1385 aa24.63■■□□□ 1.53
PDLIM4-201ENST00000253754 ABCC11Q96J66 1382 aa24.62■■□□□ 1.53
PDLIM4-201ENST00000253754 SPINK5Q9NQ38 1064 aaPredicted RBP24.62■■□□□ 1.53
PDLIM4-201ENST00000253754 ARHGAP23Q9P227 1491 aa24.61■■□□□ 1.53
PDLIM4-201ENST00000253754 C20orf194Q5TEA3 1177 aa24.61■■□□□ 1.53
PDLIM4-201ENST00000253754 CRBNQ96SW2 442 aa24.61■■□□□ 1.53
PDLIM4-201ENST00000253754 POLR3AO14802 1390 aaPredicted RBP24.61■■□□□ 1.53
PDLIM4-201ENST00000253754 ADAMTS13Q76LX8 1427 aa24.61■■□□□ 1.53
PDLIM4-201ENST00000253754 SLC26A8Q96RN1 970 aa24.6■■□□□ 1.53
PDLIM4-201ENST00000253754 CEP170BQ9Y4F5 1589 aaPredicted RBP24.6■■□□□ 1.53
PDLIM4-201ENST00000253754 SRPK2P78362 688 aaKnown RBP24.59■■□□□ 1.53
PDLIM4-201ENST00000253754 SLFN5Q08AF3 891 aa24.59■■□□□ 1.53
PDLIM4-201ENST00000253754 ANP32EQ9BTT0 268 aa24.59■■□□□ 1.53
PDLIM4-201ENST00000253754 DLC1Q96QB1 1528 aa24.59■■□□□ 1.53
PDLIM4-201ENST00000253754 SETD1BQ9UPS6 1966 aaKnown RBP24.58■■□□□ 1.53
PDLIM4-201ENST00000253754 CGNL1Q0VF96 1302 aa24.58■■□□□ 1.53
PDLIM4-201ENST00000253754 DMRT2Q9Y5R5 561 aa24.58■■□□□ 1.53
PDLIM4-201ENST00000253754 ANKRD36BQ8N2N9 1353 aa24.58■■□□□ 1.52
PDLIM4-201ENST00000253754 PUS7Q96PZ0 661 aaKnown RBP24.58■■□□□ 1.52
PDLIM4-201ENST00000253754 USP32Q8NFA0 1604 aa24.55■■□□□ 1.52
PDLIM4-201ENST00000253754 SHPRHQ149N8 1683 aa24.54■■□□□ 1.52
PDLIM4-201ENST00000253754 MTHFSP49914 203 aa24.54■■□□□ 1.52
PDLIM4-201ENST00000253754 TRMT2AQ8IZ69 625 aaKnown RBP24.54■■□□□ 1.52
PDLIM4-201ENST00000253754 CDK19Q9BWU1 502 aa24.53■■□□□ 1.52
PDLIM4-201ENST00000253754 A0A1W2PP64 1363 aa24.52■■□□□ 1.52
PDLIM4-201ENST00000253754 MED14O60244 1454 aa24.51■■□□□ 1.51
PDLIM4-201ENST00000253754 TECPR2O15040 1411 aa24.5■■□□□ 1.51
PDLIM4-201ENST00000253754 KNDC1Q76NI1 1749 aa24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 HSPA2P54652 639 aa24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 RRP7AQ9Y3A4 280 aaKnown RBP24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 TBX22Q9Y458 520 aa24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 NEUROD2Q15784 382 aa24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 SIRT1Q96EB6 747 aa24.49■■□□□ 1.51
PDLIM4-201ENST00000253754 FAM135BQ49AJ0 1406 aa24.48■■□□□ 1.51
PDLIM4-201ENST00000253754 ZNF142P52746 1687 aaPredicted RBP24.48■■□□□ 1.51
PDLIM4-201ENST00000253754 ATAD2Q6PL18 1390 aa24.48■■□□□ 1.51
PDLIM4-201ENST00000253754 ROBO2Q9HCK4 1378 aa24.48■■□□□ 1.51
PDLIM4-201ENST00000253754 NKTRP30414 1462 aaKnown RBP24.47■■□□□ 1.51
PDLIM4-201ENST00000253754 E9PSI1 815 aa24.47■■□□□ 1.51
PDLIM4-201ENST00000253754 CPS1P31327 1500 aa24.47■■□□□ 1.51
PDLIM4-201ENST00000253754 ANKLE2Q86XL3 938 aa24.46■■□□□ 1.51
PDLIM4-201ENST00000253754 WWC1Q8IX03 1113 aa24.46■■□□□ 1.51
PDLIM4-201ENST00000253754 PTPRUQ92729 1446 aa24.46■■□□□ 1.51
PDLIM4-201ENST00000253754 SKAP1Q86WV1 359 aa24.45■■□□□ 1.5
PDLIM4-201ENST00000253754 GGNBP2Q9H3C7 697 aa24.45■■□□□ 1.5
PDLIM4-201ENST00000253754 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.5
PDLIM4-201ENST00000253754 NSD2O96028 1365 aa24.45■■□□□ 1.5
PDLIM4-201ENST00000253754 BCAR3O75815 825 aa24.44■■□□□ 1.5
PDLIM4-201ENST00000253754 RUNDC1Q96C34 613 aa24.44■■□□□ 1.5
PDLIM4-201ENST00000253754 NINLQ9Y2I6 1382 aa24.43■■□□□ 1.5
PDLIM4-201ENST00000253754 WASLO00401 505 aaPredicted RBP24.43■■□□□ 1.5
PDLIM4-201ENST00000253754 TCP11L2Q8N4U5 519 aa24.42■■□□□ 1.5
PDLIM4-201ENST00000253754 CFAP53Q96M91 514 aa24.42■■□□□ 1.5
PDLIM4-201ENST00000253754 CD163L1Q9NR16 1453 aa24.42■■□□□ 1.5
PDLIM4-201ENST00000253754 IQSEC2Q5JU85 1478 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms