RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 PTCH1Q13635 1447 aa15.65■□□□□ 0.1
VPS50-201ENST00000251739 SPATA31A6Q5VVP1 1343 aa15.65■□□□□ 0.1
VPS50-201ENST00000251739 ZNF326Q5BKZ1 582 aaKnown RBP15.64■□□□□ 0.09
VPS50-201ENST00000251739 IFT172Q9UG01 1749 aa15.63■□□□□ 0.09
VPS50-201ENST00000251739 SETD5Q9C0A6 1442 aa15.63■□□□□ 0.09
VPS50-201ENST00000251739 MKRN4PQ13434 485 aaPredicted RBP15.61■□□□□ 0.09
VPS50-201ENST00000251739 RPGRIP1LQ68CZ1 1315 aa15.58■□□□□ 0.08
VPS50-201ENST00000251739 ROBO2Q9HCK4 1378 aa15.58■□□□□ 0.08
VPS50-201ENST00000251739 C1orf167Q5SNV9 1468 aa15.58■□□□□ 0.08
VPS50-201ENST00000251739 SPATA31E1Q6ZUB1 1445 aa15.57■□□□□ 0.08
VPS50-201ENST00000251739 CDC42BPGQ6DT37 1551 aa15.57■□□□□ 0.08
VPS50-201ENST00000251739 VGFO15240 615 aaPredicted RBP15.56■□□□□ 0.08
VPS50-201ENST00000251739 KNDC1Q76NI1 1749 aa15.55■□□□□ 0.08
VPS50-201ENST00000251739 TRIM52Q96A61 297 aa15.55■□□□□ 0.08
VPS50-201ENST00000251739 PNPLA6Q8IY17 1366 aa15.54■□□□□ 0.08
VPS50-201ENST00000251739 TECPR2O15040 1411 aa15.53■□□□□ 0.08
VPS50-201ENST00000251739 CDK12Q9NYV4 1490 aaPredicted RBP15.52■□□□□ 0.08
VPS50-201ENST00000251739 COL22A1Q8NFW1 1626 aaPredicted RBP15.52■□□□□ 0.08
VPS50-201ENST00000251739 CCDC144AA2RUR9 1427 aa15.51■□□□□ 0.07
VPS50-201ENST00000251739 ZNF772Q68DY9 489 aaPredicted RBP15.51■□□□□ 0.07
VPS50-201ENST00000251739 MEX3CQ5U5Q3 659 aaKnown RBP15.5■□□□□ 0.07
VPS50-201ENST00000251739 LRRC59Q96AG4 307 aaKnown RBP15.5■□□□□ 0.07
VPS50-201ENST00000251739 DDX17Q92841 729 aaKnown RBP15.49■□□□□ 0.07
VPS50-201ENST00000251739 PIK3C2GO75747 1445 aa15.49■□□□□ 0.07
VPS50-201ENST00000251739 SOS2Q07890 1332 aaPredicted RBP15.48■□□□□ 0.07
VPS50-201ENST00000251739 ANKRD30BQ9BXX2 1392 aa15.48■□□□□ 0.07
VPS50-201ENST00000251739 ADGRF5Q8IZF2 1346 aa15.47■□□□□ 0.07
VPS50-201ENST00000251739 FMN2Q9NZ56 1722 aa15.47■□□□□ 0.07
VPS50-201ENST00000251739 PXDNQ92626 1479 aa15.46■□□□□ 0.07
VPS50-201ENST00000251739 NRXN1Q9ULB1 1477 aa15.46■□□□□ 0.07
VPS50-201ENST00000251739 AFF2P51816 1311 aa15.46■□□□□ 0.07
VPS50-201ENST00000251739 MARF1Q9Y4F3 1742 aaKnown RBP15.46■□□□□ 0.07
VPS50-201ENST00000251739 NUTM2BA6NNL0 878 aaPredicted RBP15.46■□□□□ 0.07
VPS50-201ENST00000251739 NUTM2EB1AL46 878 aaPredicted RBP15.46■□□□□ 0.07
VPS50-201ENST00000251739 NUTM2AQ8IVF1 878 aaPredicted RBP15.46■□□□□ 0.07
VPS50-201ENST00000251739 ORAI2Q96SN7 254 aa15.46■□□□□ 0.07
VPS50-201ENST00000251739 LRPPRCP42704 1394 aaKnown RBP15.46■□□□□ 0.07
VPS50-201ENST00000251739 MPHOSPH9Q99550 1183 aa15.45■□□□□ 0.06
VPS50-201ENST00000251739 MYOM2P54296 1465 aa15.45■□□□□ 0.06
VPS50-201ENST00000251739 ABCC11Q96J66 1382 aa15.44■□□□□ 0.06
VPS50-201ENST00000251739 RGS12O14924 1447 aa15.43■□□□□ 0.06
VPS50-201ENST00000251739 KIF1AQ12756 1690 aa15.42■□□□□ 0.06
VPS50-201ENST00000251739 RXRBP28702 533 aa15.42■□□□□ 0.06
VPS50-201ENST00000251739 UPF1Q92900 1129 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS50-201ENST00000251739 YTHDC2Q9H6S0 1430 aaKnown RBP15.41■□□□□ 0.06
VPS50-201ENST00000251739 PLEKHH1Q9ULM0 1364 aa15.4■□□□□ 0.06
VPS50-201ENST00000251739 RGPD8O14715 1765 aaPredicted RBP15.4■□□□□ 0.06
VPS50-201ENST00000251739 C8orf37Q96NL8 207 aa15.4■□□□□ 0.06
VPS50-201ENST00000251739 ACIN1Q9UKV3 1341 aaKnown RBP15.4■□□□□ 0.06
VPS50-201ENST00000251739 RGL3Q3MIN7 710 aa15.39■□□□□ 0.05
VPS50-201ENST00000251739 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.39■□□□□ 0.05
VPS50-201ENST00000251739 NPHP3Q7Z494 1330 aa15.39■□□□□ 0.05
VPS50-201ENST00000251739 RBM6P78332 1123 aaKnown RBP15.37■□□□□ 0.05
VPS50-201ENST00000251739 WAPLQ7Z5K2 1190 aa15.37■□□□□ 0.05
VPS50-201ENST00000251739 ADGRB1O14514 1584 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 ATRNO75882 1429 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 EP400Q96L91 3159 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 TMEM132EQ6IEE7 984 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 DLC1Q96QB1 1528 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 ADGRB2O60241 1585 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 RAB3GAP2Q9H2M9 1393 aa15.36■□□□□ 0.05
VPS50-201ENST00000251739 ABCA3Q99758 1704 aa15.35■□□□□ 0.05
VPS50-201ENST00000251739 ADAMTS2O95450 1211 aa15.35■□□□□ 0.05
VPS50-201ENST00000251739 FNBP4Q8N3X1 1017 aaPredicted RBP15.35■□□□□ 0.05
VPS50-201ENST00000251739 SIRT1Q96EB6 747 aa15.35■□□□□ 0.05
VPS50-201ENST00000251739 C14orf93Q9H972 538 aaKnown RBP15.35■□□□□ 0.05
VPS50-201ENST00000251739 QTRT2Q9H974 415 aaKnown RBP15.35■□□□□ 0.05
VPS50-201ENST00000251739 STK26Q9P289 416 aa15.35■□□□□ 0.05
VPS50-201ENST00000251739 USP32Q8NFA0 1604 aa15.35■□□□□ 0.05
VPS50-201ENST00000251739 ESCO1Q5FWF5 840 aa15.34■□□□□ 0.05
VPS50-201ENST00000251739 NGLY1Q96IV0 654 aa15.34■□□□□ 0.05
VPS50-201ENST00000251739 BCL9LQ86UU0 1499 aa15.33■□□□□ 0.05
VPS50-201ENST00000251739 FOXO3O43524 673 aa15.32■□□□□ 0.04
VPS50-201ENST00000251739 SLIT2O94813 1529 aa15.3■□□□□ 0.04
VPS50-201ENST00000251739 XPCQ01831 940 aaPredicted RBP15.3■□□□□ 0.04
VPS50-201ENST00000251739 SPATA31A3Q5VYP0 1347 aa15.3■□□□□ 0.04
VPS50-201ENST00000251739 USP21Q9UK80 565 aa15.3■□□□□ 0.04
VPS50-201ENST00000251739 TRPM3Q9HCF6 1732 aaPredicted RBP15.29■□□□□ 0.04
VPS50-201ENST00000251739 DHX57Q6P158 1386 aaKnown RBP15.29■□□□□ 0.04
VPS50-201ENST00000251739 CFAP70Q5T0N1 1121 aa15.29■□□□□ 0.04
VPS50-201ENST00000251739 TRPC5Q9UL62 973 aaPredicted RBP15.29■□□□□ 0.04
VPS50-201ENST00000251739 NWD2Q9ULI1 1742 aa15.29■□□□□ 0.04
VPS50-201ENST00000251739 PLCH1Q4KWH8 1693 aa15.28■□□□□ 0.04
VPS50-201ENST00000251739 GLI3P10071 1580 aa15.28■□□□□ 0.04
VPS50-201ENST00000251739 TNS3Q68CZ2 1445 aa15.28■□□□□ 0.04
VPS50-201ENST00000251739 NUTM2FA1L443 756 aa15.28■□□□□ 0.04
VPS50-201ENST00000251739 ANKARQ7Z5J8 1434 aa15.27■□□□□ 0.04
VPS50-201ENST00000251739 ARHGEF28Q8N1W1 1705 aaKnown RBP15.27■□□□□ 0.04
VPS50-201ENST00000251739 FKBP8Q14318 412 aa15.27■□□□□ 0.04
VPS50-201ENST00000251739 ATAD2Q6PL18 1390 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 ALS2Q96Q42 1657 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 SPDYE2BA6NHP3 402 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 SPDYE6P0CI01 402 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 SPDYE2Q495Y8 402 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 CRYBG1Q9Y4K1 1723 aa15.26■□□□□ 0.03
VPS50-201ENST00000251739 BRWD3Q6RI45 1802 aa15.25■□□□□ 0.03
VPS50-201ENST00000251739 PRAM1Q96QH2 718 aa15.25■□□□□ 0.03
VPS50-201ENST00000251739 SBNO1A3KN83 1393 aa15.24■□□□□ 0.03
VPS50-201ENST00000251739 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
VPS50-201ENST00000251739 PHF8Q9UPP1 1060 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms