RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 ZBTB22O15209 634 aa22.73■■□□□ 1.23
PTPN12-201ENST00000248594 PRIM1P49642 420 aaKnown RBP22.73■■□□□ 1.23
PTPN12-201ENST00000248594 CARMIL2Q6F5E8 1435 aa22.73■■□□□ 1.23
PTPN12-201ENST00000248594 PRPF40AO75400 957 aaKnown RBP22.72■■□□□ 1.23
PTPN12-201ENST00000248594 ANKRD50Q9ULJ7 1429 aa22.72■■□□□ 1.23
PTPN12-201ENST00000248594 DYNC1I1O14576 645 aa22.72■■□□□ 1.23
PTPN12-201ENST00000248594 RAB3GAP1Q15042 981 aa22.71■■□□□ 1.23
PTPN12-201ENST00000248594 C17orf53Q8N3J3 647 aaPredicted RBP22.71■■□□□ 1.23
PTPN12-201ENST00000248594 CGNQ9P2M7 1197 aaKnown RBP22.71■■□□□ 1.23
PTPN12-201ENST00000248594 PLB1Q6P1J6 1458 aa22.71■■□□□ 1.23
PTPN12-201ENST00000248594 ZNF521Q96K83 1311 aa22.71■■□□□ 1.23
PTPN12-201ENST00000248594 CDK11BP21127 795 aaKnown RBP22.7■■□□□ 1.23
PTPN12-201ENST00000248594 CCDC94Q9BW85 323 aaPredicted RBP22.7■■□□□ 1.23
PTPN12-201ENST00000248594 PZPP20742 1482 aa22.7■■□□□ 1.22
PTPN12-201ENST00000248594 GTF2E1P29083 439 aaPredicted RBP22.7■■□□□ 1.22
PTPN12-201ENST00000248594 DMTNQ08495 405 aa22.7■■□□□ 1.22
PTPN12-201ENST00000248594 SASS6Q6UVJ0 657 aa22.7■■□□□ 1.22
PTPN12-201ENST00000248594 GAS2L2Q8NHY3 880 aa22.7■■□□□ 1.22
PTPN12-201ENST00000248594 BAG4O95429 457 aaKnown RBP22.69■■□□□ 1.22
PTPN12-201ENST00000248594 NOL7Q9UMY1 257 aaKnown RBP22.69■■□□□ 1.22
PTPN12-201ENST00000248594 SYCE3A1L190 88 aa22.68■■□□□ 1.22
PTPN12-201ENST00000248594 RARSP54136 660 aaKnown RBP22.68■■□□□ 1.22
PTPN12-201ENST00000248594 ZSCAN23Q3MJ62 389 aa22.68■■□□□ 1.22
PTPN12-201ENST00000248594 POLR1AO95602 1720 aaPredicted RBP22.68■■□□□ 1.22
PTPN12-201ENST00000248594 ANKRD30AQ9BXX3 1397 aa22.68■■□□□ 1.22
PTPN12-201ENST00000248594 ZSCAN20P17040 1043 aaPredicted RBP22.67■■□□□ 1.22
PTPN12-201ENST00000248594 ZKSCAN5Q9Y2L8 839 aa22.67■■□□□ 1.22
PTPN12-201ENST00000248594 RALGAPBQ86X10 1494 aa22.67■■□□□ 1.22
PTPN12-201ENST00000248594 GCC2Q8IWJ2 1684 aa22.67■■□□□ 1.22
PTPN12-201ENST00000248594 ZNF771Q7L3S4 317 aaPredicted RBP22.66■■□□□ 1.22
PTPN12-201ENST00000248594 MTERF4Q7Z6M4 381 aaKnown RBP22.66■■□□□ 1.22
PTPN12-201ENST00000248594 CSPP1Q1MSJ5 1256 aa22.66■■□□□ 1.22
PTPN12-201ENST00000248594 WWC1Q8IX03 1113 aa22.66■■□□□ 1.22
PTPN12-201ENST00000248594 PLEKHH2Q8IVE3 1493 aa22.66■■□□□ 1.22
PTPN12-201ENST00000248594 STAC3Q96MF2 364 aa22.66■■□□□ 1.22
PTPN12-201ENST00000248594 OSCARQ8IYS5 282 aa22.65■■□□□ 1.22
PTPN12-201ENST00000248594 TESK2Q96S53 571 aa22.65■■□□□ 1.22
PTPN12-201ENST00000248594 CHGAP10645 457 aaKnown RBP22.64■■□□□ 1.22
PTPN12-201ENST00000248594 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.64■■□□□ 1.22
PTPN12-201ENST00000248594 CAMSAP2Q08AD1 1489 aa22.64■■□□□ 1.22
PTPN12-201ENST00000248594 PKP1Q13835 747 aa22.63■■□□□ 1.21
PTPN12-201ENST00000248594 KLHL40Q2TBA0 621 aa22.63■■□□□ 1.21
PTPN12-201ENST00000248594 SMC4Q9NTJ3 1288 aa22.63■■□□□ 1.21
PTPN12-201ENST00000248594 K7ELQ4 463 aaPredicted RBP22.62■■□□□ 1.21
PTPN12-201ENST00000248594 SMC5Q8IY18 1101 aa22.62■■□□□ 1.21
PTPN12-201ENST00000248594 ERCC6L2Q5T890 1561 aa22.61■■□□□ 1.21
PTPN12-201ENST00000248594 MBD5Q9P267 1494 aa22.61■■□□□ 1.21
PTPN12-201ENST00000248594 ATP2B3Q16720 1220 aa22.61■■□□□ 1.21
PTPN12-201ENST00000248594 TCOF1Q13428 1488 aaKnown RBP22.61■■□□□ 1.21
PTPN12-201ENST00000248594 TSR2Q969E8 191 aaKnown RBP22.6■■□□□ 1.21
PTPN12-201ENST00000248594 DZIP1LQ8IYY4 767 aaKnown RBP22.6■■□□□ 1.21
PTPN12-201ENST00000248594 NOL8Q76FK4 1167 aaKnown RBP22.59■■□□□ 1.21
PTPN12-201ENST00000248594 TRMT2AQ8IZ69 625 aaKnown RBP22.59■■□□□ 1.21
PTPN12-201ENST00000248594 ANKRD45Q5TZF3 282 aa22.59■■□□□ 1.21
PTPN12-201ENST00000248594 PAXIP1Q6ZW49 1069 aaPredicted RBP22.59■■□□□ 1.21
PTPN12-201ENST00000248594 CIZ1Q9ULV3 898 aaPredicted RBP22.59■■□□□ 1.21
PTPN12-201ENST00000248594 ZNF500O60304 480 aaPredicted RBP22.59■■□□□ 1.21
PTPN12-201ENST00000248594 TERF1P54274 439 aa22.58■■□□□ 1.21
PTPN12-201ENST00000248594 KIAA2012Q0VF49 1180 aa22.58■■□□□ 1.21
PTPN12-201ENST00000248594 CCDC39Q9UFE4 941 aa22.58■■□□□ 1.21
PTPN12-201ENST00000248594 KIF14Q15058 1648 aa22.58■■□□□ 1.21
PTPN12-201ENST00000248594 PTMSP20962 102 aa22.58■■□□□ 1.2
PTPN12-201ENST00000248594 KLHL34Q8N239 644 aa22.58■■□□□ 1.2
PTPN12-201ENST00000248594 ROCK1Q13464 1354 aa22.58■■□□□ 1.2
PTPN12-201ENST00000248594 RAPGEF6Q8TEU7 1601 aa22.57■■□□□ 1.2
PTPN12-201ENST00000248594 MVPQ14764 893 aaKnown RBP22.57■■□□□ 1.2
PTPN12-201ENST00000248594 NUP153P49790 1475 aaKnown RBP22.57■■□□□ 1.2
PTPN12-201ENST00000248594 CHMP4AQ9BY43 222 aa22.57■■□□□ 1.2
PTPN12-201ENST00000248594 ERBINQ96RT1 1412 aa22.57■■□□□ 1.2
PTPN12-201ENST00000248594 NUTM2DQ5VT03 806 aaPredicted RBP22.56■■□□□ 1.2
PTPN12-201ENST00000248594 ZKSCAN2Q63HK3 967 aa22.56■■□□□ 1.2
PTPN12-201ENST00000248594 TCP11L2Q8N4U5 519 aa22.56■■□□□ 1.2
PTPN12-201ENST00000248594 C1orf115Q9H7X2 142 aa22.56■■□□□ 1.2
PTPN12-201ENST00000248594 TTC12Q9H892 705 aaPredicted RBP22.55■■□□□ 1.2
PTPN12-201ENST00000248594 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.55■■□□□ 1.27e-7■□□□□ 9.4
PTPN12-201ENST00000248594 U2AF2P26368 475 aaKnown RBP eCLIP22.54■■□□□ 1.28e-13■■■■■ 37.7
PTPN12-201ENST00000248594 APBB1O00213 710 aa22.54■■□□□ 1.2
PTPN12-201ENST00000248594 TRERF1Q96PN7 1200 aa22.54■■□□□ 1.2
PTPN12-201ENST00000248594 PTPRGP23470 1445 aa22.53■■□□□ 1.2
PTPN12-201ENST00000248594 ARHGEF11O15085 1522 aa22.53■■□□□ 1.2
PTPN12-201ENST00000248594 SAFB2Q14151 953 aaKnown RBP eCLIP22.53■■□□□ 1.2
PTPN12-201ENST00000248594 NSFL1CQ9UNZ2 370 aaKnown RBP22.51■■□□□ 1.19
PTPN12-201ENST00000248594 PDCL2Q8N4E4 241 aa22.51■■□□□ 1.19
PTPN12-201ENST00000248594 CCDC144AA2RUR9 1427 aa22.51■■□□□ 1.19
PTPN12-201ENST00000248594 UTP14CQ5TAP6 766 aaKnown RBP22.51■■□□□ 1.19
PTPN12-201ENST00000248594 ZNF710Q8N1W2 664 aa22.5■■□□□ 1.19
PTPN12-201ENST00000248594 DDIT3P35638 169 aa22.5■■□□□ 1.19
PTPN12-201ENST00000248594 TAF7LQ5H9L4 462 aa22.5■■□□□ 1.19
PTPN12-201ENST00000248594 SNX21Q969T3 373 aa22.5■■□□□ 1.19
PTPN12-201ENST00000248594 ABCA8O94911 1581 aa22.49■■□□□ 1.19
PTPN12-201ENST00000248594 ZGPATQ8N5A5 531 aaKnown RBP22.49■■□□□ 1.19
PTPN12-201ENST00000248594 KIF3AQ9Y496 699 aa22.49■■□□□ 1.19
PTPN12-201ENST00000248594 UHRF1BP1Q6BDS2 1440 aa22.49■■□□□ 1.19
PTPN12-201ENST00000248594 LMBRD1Q9NUN5 540 aa22.48■■□□□ 1.19
PTPN12-201ENST00000248594 TMEM63CQ9P1W3 806 aa22.48■■□□□ 1.19
PTPN12-201ENST00000248594 GPATCH8Q9UKJ3 1502 aaKnown RBP22.48■■□□□ 1.19
PTPN12-201ENST00000248594 C9orf84Q5VXU9 1444 aa22.48■■□□□ 1.19
PTPN12-201ENST00000248594 MYRIPQ8NFW9 859 aa22.47■■□□□ 1.19
PTPN12-201ENST00000248594 GPT2Q8TD30 523 aa22.47■■□□□ 1.19
PTPN12-201ENST00000248594 GDPD2Q9HCC8 539 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms