RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PRAM1Q96QH2 718 aa12.03□□□□□ -0.48
VPS4B-201ENST00000238497 C14orf93Q9H972 538 aaKnown RBP12.03□□□□□ -0.48
VPS4B-201ENST00000238497 LMOD2Q6P5Q4 547 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 ROBO1Q9Y6N7 1651 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 NRXN3Q9Y4C0 1643 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 ADGRL3Q9HAR2 1447 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 FOXO3O43524 673 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 L3MBTL2Q969R5 705 aa12.02□□□□□ -0.49
VPS4B-201ENST00000238497 JCADQ9P266 1359 aa12.01□□□□□ -0.49
VPS4B-201ENST00000238497 PLEKHH1Q9ULM0 1364 aa12□□□□□ -0.49
VPS4B-201ENST00000238497 MINK1Q8N4C8 1332 aaPredicted RBP12□□□□□ -0.49
VPS4B-201ENST00000238497 ADAMTS2O95450 1211 aa12□□□□□ -0.49
VPS4B-201ENST00000238497 LRPPRCP42704 1394 aaKnown RBP12□□□□□ -0.49
VPS4B-201ENST00000238497 LRRC59Q96AG4 307 aaKnown RBP11.99□□□□□ -0.49
VPS4B-201ENST00000238497 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-201ENST00000238497 YTHDC2Q9H6S0 1430 aaKnown RBP11.99□□□□□ -0.49
VPS4B-201ENST00000238497 MED1Q15648 1581 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-201ENST00000238497 MST1RQ04912 1400 aa11.98□□□□□ -0.49
VPS4B-201ENST00000238497 HAP1P54257 671 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-201ENST00000238497 PIK3C2GO75747 1445 aa11.97□□□□□ -0.49
VPS4B-201ENST00000238497 PPLO60437 1756 aa11.97□□□□□ -0.49
VPS4B-201ENST00000238497 HSPA5P11021 654 aaKnown RBP11.97□□□□□ -0.49
VPS4B-201ENST00000238497 PTCH1Q13635 1447 aa11.97□□□□□ -0.49
VPS4B-201ENST00000238497 ABCC11Q96J66 1382 aa11.97□□□□□ -0.49
VPS4B-201ENST00000238497 C8orf37Q96NL8 207 aa11.97□□□□□ -0.49
VPS4B-201ENST00000238497 PMFBP1Q8TBY8 1022 aa11.96□□□□□ -0.49
VPS4B-201ENST00000238497 DCCP43146 1447 aa11.96□□□□□ -0.49
VPS4B-201ENST00000238497 SOCS7O14512 581 aa11.96□□□□□ -0.49
VPS4B-201ENST00000238497 C1orf167Q5SNV9 1468 aa11.96□□□□□ -0.49
VPS4B-201ENST00000238497 XRN1Q8IZH2 1706 aaKnown RBP11.96□□□□□ -0.5
VPS4B-201ENST00000238497 PHLPP1O60346 1717 aa11.95□□□□□ -0.5
VPS4B-201ENST00000238497 EIF4G2P78344 907 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS4B-201ENST00000238497 PELP1Q8IZL8 1130 aaKnown RBP11.94□□□□□ -0.5
VPS4B-201ENST00000238497 NGLY1Q96IV0 654 aa11.94□□□□□ -0.5
VPS4B-201ENST00000238497 NPHP3Q7Z494 1330 aa11.94□□□□□ -0.5
VPS4B-201ENST00000238497 PSME1Q06323 249 aa11.94□□□□□ -0.5
VPS4B-201ENST00000238497 NBPF1Q3BBV0 1214 aa11.94□□□□□ -0.5
VPS4B-201ENST00000238497 POTEAQ6S8J7 498 aa11.94□□□□□ -0.5
VPS4B-201ENST00000238497 SPATA31A6Q5VVP1 1343 aa11.93□□□□□ -0.5
VPS4B-201ENST00000238497 ASXL1Q8IXJ9 1541 aa11.93□□□□□ -0.5
VPS4B-201ENST00000238497 RGS17Q9UGC6 210 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-201ENST00000238497 PHF8Q9UPP1 1060 aa11.93□□□□□ -0.5
VPS4B-201ENST00000238497 STAC3Q96MF2 364 aa11.92□□□□□ -0.5
VPS4B-201ENST00000238497 PAK3O75914 559 aaPredicted RBP11.92□□□□□ -0.5
VPS4B-201ENST00000238497 FAM9BQ8IZU0 186 aa11.92□□□□□ -0.5
VPS4B-201ENST00000238497 NGDNQ8NEJ9 315 aaKnown RBP11.92□□□□□ -0.5
VPS4B-201ENST00000238497 KRT28Q7Z3Y7 464 aa11.91□□□□□ -0.5
VPS4B-201ENST00000238497 MYOM2P54296 1465 aa11.91□□□□□ -0.5
VPS4B-201ENST00000238497 TIMELESSQ9UNS1 1208 aa11.91□□□□□ -0.5
VPS4B-201ENST00000238497 NALCNQ8IZF0 1738 aa11.9□□□□□ -0.5
VPS4B-201ENST00000238497 AFF2P51816 1311 aa11.89□□□□□ -0.51
VPS4B-201ENST00000238497 SRPK2P78362 688 aaKnown RBP11.89□□□□□ -0.51
VPS4B-201ENST00000238497 HNRNPUQ00839 825 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS4B-201ENST00000238497 NBPF8Q3BBV2 869 aa11.89□□□□□ -0.51
VPS4B-201ENST00000238497 ZNF772Q68DY9 489 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-201ENST00000238497 SIRT1Q96EB6 747 aa11.89□□□□□ -0.51
VPS4B-201ENST00000238497 CABLES1Q8TDN4 633 aa11.88□□□□□ -0.51
VPS4B-201ENST00000238497 SOS2Q07890 1332 aaPredicted RBP11.88□□□□□ -0.51
VPS4B-201ENST00000238497 TECPR2O15040 1411 aa11.88□□□□□ -0.51
VPS4B-201ENST00000238497 WASLO00401 505 aaPredicted RBP11.88□□□□□ -0.51
VPS4B-201ENST00000238497 SETD1AO15047 1707 aaKnown RBP11.87□□□□□ -0.51
VPS4B-201ENST00000238497 PNPLA6Q8IY17 1366 aa11.87□□□□□ -0.51
VPS4B-201ENST00000238497 COL16A1Q07092 1604 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-201ENST00000238497 IRX6P78412 446 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-201ENST00000238497 FKBP8Q14318 412 aa11.86□□□□□ -0.51
VPS4B-201ENST00000238497 RXRBP28702 533 aa11.86□□□□□ -0.51
VPS4B-201ENST00000238497 CDK19Q9BWU1 502 aa11.86□□□□□ -0.51
VPS4B-201ENST00000238497 QTRT2Q9H974 415 aaKnown RBP11.86□□□□□ -0.51
VPS4B-201ENST00000238497 NRXN1Q9ULB1 1477 aa11.86□□□□□ -0.51
VPS4B-201ENST00000238497 IFT172Q9UG01 1749 aa11.86□□□□□ -0.51
VPS4B-201ENST00000238497 AHDC1Q5TGY3 1603 aaPredicted RBP11.86□□□□□ -0.51
VPS4B-201ENST00000238497 CCDC9Q9Y3X0 531 aaKnown RBP11.86□□□□□ -0.51
VPS4B-201ENST00000238497 LRP6O75581 1613 aa11.85□□□□□ -0.51
VPS4B-201ENST00000238497 NUDT16Q96DE0 195 aaKnown RBP11.85□□□□□ -0.51
VPS4B-201ENST00000238497 NUTM2GQ5VZR2 741 aa11.85□□□□□ -0.51
VPS4B-201ENST00000238497 USP21Q9UK80 565 aa11.85□□□□□ -0.51
VPS4B-201ENST00000238497 GPRASP1Q5JY77 1395 aa11.85□□□□□ -0.51
VPS4B-201ENST00000238497 C11orf95C9JLR9 678 aaPredicted RBP11.85□□□□□ -0.51
VPS4B-201ENST00000238497 CENPJQ9HC77 1338 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-201ENST00000238497 ROCK2O75116 1388 aaKnown RBP11.84□□□□□ -0.51
VPS4B-201ENST00000238497 NEFLP07196 543 aa11.84□□□□□ -0.51
VPS4B-201ENST00000238497 CABP2Q9NPB3 220 aa11.84□□□□□ -0.51
VPS4B-201ENST00000238497 A0A0G2JS52 829 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 MYT1Q01538 1121 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 CDC42BPGQ6DT37 1551 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 PRR36Q9H6K5 1346 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 CARD11Q9BXL7 1154 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 PRAG1Q86YV5 1406 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 WASHC2AQ641Q2 1341 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 ZBTB7CA1YPR0 619 aa11.83□□□□□ -0.52
VPS4B-201ENST00000238497 SPATA31A3Q5VYP0 1347 aa11.82□□□□□ -0.52
VPS4B-201ENST00000238497 MRS2Q9HD23 443 aa11.82□□□□□ -0.52
VPS4B-201ENST00000238497 SALL2Q9Y467 1007 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-201ENST00000238497 LAMC1P11047 1609 aa11.81□□□□□ -0.52
VPS4B-201ENST00000238497 ADGRB1O14514 1584 aa11.81□□□□□ -0.52
VPS4B-201ENST00000238497 EIF3AQ14152 1382 aaKnown RBP11.81□□□□□ -0.52
VPS4B-201ENST00000238497 CCDC61Q9Y6R9 512 aa11.8□□□□□ -0.52
VPS4B-201ENST00000238497 CCDC184Q52MB2 194 aa11.8□□□□□ -0.52
VPS4B-201ENST00000238497 RBM6P78332 1123 aaKnown RBP11.79□□□□□ -0.52
VPS4B-201ENST00000238497 TRPC5Q9UL62 973 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms