RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TECPR2O15040 1411 aa32.74■■■□□ 2.83
VTI1B-201ENST00000216456 CFAP70Q5T0N1 1121 aa32.73■■■□□ 2.83
VTI1B-201ENST00000216456 ABCC11Q96J66 1382 aa32.71■■■□□ 2.83
VTI1B-201ENST00000216456 YTHDC2Q9H6S0 1430 aaKnown RBP32.7■■■□□ 2.83
VTI1B-201ENST00000216456 C14orf93Q9H972 538 aaKnown RBP32.69■■■□□ 2.82
VTI1B-201ENST00000216456 CDC42BPGQ6DT37 1551 aa32.69■■■□□ 2.82
VTI1B-201ENST00000216456 SOS2Q07890 1332 aaPredicted RBP32.69■■■□□ 2.82
VTI1B-201ENST00000216456 NRXN1Q9ULB1 1477 aa32.68■■■□□ 2.82
VTI1B-201ENST00000216456 ESCO1Q5FWF5 840 aa32.68■■■□□ 2.82
VTI1B-201ENST00000216456 ACIN1Q9UKV3 1341 aaKnown RBP32.68■■■□□ 2.82
VTI1B-201ENST00000216456 LAMC1P11047 1609 aa32.67■■■□□ 2.82
VTI1B-201ENST00000216456 XPCQ01831 940 aaPredicted RBP32.66■■■□□ 2.82
VTI1B-201ENST00000216456 ZNF772Q68DY9 489 aaPredicted RBP32.66■■■□□ 2.82
VTI1B-201ENST00000216456 AFF2P51816 1311 aa32.66■■■□□ 2.82
VTI1B-201ENST00000216456 C8orf37Q96NL8 207 aa32.65■■■□□ 2.82
VTI1B-201ENST00000216456 MYOM2P54296 1465 aa32.65■■■□□ 2.82
VTI1B-201ENST00000216456 KNDC1Q76NI1 1749 aa32.65■■■□□ 2.82
VTI1B-201ENST00000216456 ADAMTS2O95450 1211 aa32.63■■■□□ 2.81
VTI1B-201ENST00000216456 FOXO3O43524 673 aa32.61■■■□□ 2.81
VTI1B-201ENST00000216456 SAFB2Q14151 953 aaKnown RBP eCLIP32.6■■■□□ 2.81
VTI1B-201ENST00000216456 KDM2AQ9Y2K7 1162 aa32.59■■■□□ 2.81
VTI1B-201ENST00000216456 PXDNQ92626 1479 aa32.56■■■□□ 2.8
VTI1B-201ENST00000216456 DHX57Q6P158 1386 aaKnown RBP32.56■■■□□ 2.8
VTI1B-201ENST00000216456 PRAM1Q96QH2 718 aa32.55■■■□□ 2.8
VTI1B-201ENST00000216456 NPHP3Q7Z494 1330 aa32.54■■■□□ 2.8
VTI1B-201ENST00000216456 RXRBP28702 533 aa32.54■■■□□ 2.8
VTI1B-201ENST00000216456 FMN2Q9NZ56 1722 aa32.54■■■□□ 2.8
VTI1B-201ENST00000216456 DCAF11Q8TEB1 546 aa32.53■■■□□ 2.8
VTI1B-201ENST00000216456 SIRT1Q96EB6 747 aa32.51■■■□□ 2.79
VTI1B-201ENST00000216456 NGLY1Q96IV0 654 aa32.51■■■□□ 2.79
VTI1B-201ENST00000216456 ADGRB1O14514 1584 aa32.5■■■□□ 2.79
VTI1B-201ENST00000216456 HRCP23327 699 aa32.5■■■□□ 2.79
VTI1B-201ENST00000216456 QTRT2Q9H974 415 aaKnown RBP32.49■■■□□ 2.79
VTI1B-201ENST00000216456 TRAK1Q9UPV9 953 aa32.48■■■□□ 2.79
VTI1B-201ENST00000216456 COL22A1Q8NFW1 1626 aaPredicted RBP32.46■■■□□ 2.79
VTI1B-201ENST00000216456 RGPD8O14715 1765 aaPredicted RBP32.45■■■□□ 2.78
VTI1B-201ENST00000216456 POGKQ9P215 609 aa32.44■■■□□ 2.78
VTI1B-201ENST00000216456 HIRIP3Q9BW71 556 aaPredicted RBP32.43■■■□□ 2.78
VTI1B-201ENST00000216456 DLC1Q96QB1 1528 aa32.41■■■□□ 2.78
VTI1B-201ENST00000216456 KRT28Q7Z3Y7 464 aa32.4■■■□□ 2.78
VTI1B-201ENST00000216456 USP21Q9UK80 565 aa32.4■■■□□ 2.78
VTI1B-201ENST00000216456 PHF8Q9UPP1 1060 aa32.4■■■□□ 2.78
VTI1B-201ENST00000216456 RGS12O14924 1447 aa32.4■■■□□ 2.78
VTI1B-201ENST00000216456 UPF1Q92900 1129 aaKnown RBP eCLIP32.39■■■□□ 2.781e-7■□□□□ 10
VTI1B-201ENST00000216456 MINK1Q8N4C8 1332 aaPredicted RBP32.38■■■□□ 2.77
VTI1B-201ENST00000216456 PLEKHG5O94827 1062 aa32.38■■■□□ 2.77
VTI1B-201ENST00000216456 RBM6P78332 1123 aaKnown RBP32.38■■■□□ 2.77
VTI1B-201ENST00000216456 SPATA31A3Q5VYP0 1347 aa32.37■■■□□ 2.77
VTI1B-201ENST00000216456 KIF1AQ12756 1690 aa32.37■■■□□ 2.77
VTI1B-201ENST00000216456 CDK12Q9NYV4 1490 aaPredicted RBP32.36■■■□□ 2.77
VTI1B-201ENST00000216456 FNBP4Q8N3X1 1017 aaPredicted RBP32.36■■■□□ 2.77
VTI1B-201ENST00000216456 PMFBP1Q8TBY8 1022 aa32.36■■■□□ 2.77
VTI1B-201ENST00000216456 USP32Q8NFA0 1604 aa32.36■■■□□ 2.77
VTI1B-201ENST00000216456 PRR36Q9H6K5 1346 aa32.31■■■□□ 2.76
VTI1B-201ENST00000216456 CABLES1Q8TDN4 633 aa32.31■■■□□ 2.76
VTI1B-201ENST00000216456 ADGRB2O60241 1585 aa32.3■■■□□ 2.76
VTI1B-201ENST00000216456 BCL9LQ86UU0 1499 aa32.29■■■□□ 2.76
VTI1B-201ENST00000216456 ATRNO75882 1429 aa32.28■■■□□ 2.76
VTI1B-201ENST00000216456 TRPC5Q9UL62 973 aaPredicted RBP32.28■■■□□ 2.76
VTI1B-201ENST00000216456 TNS3Q68CZ2 1445 aa32.27■■■□□ 2.76
VTI1B-201ENST00000216456 LMOD2Q6P5Q4 547 aa32.26■■■□□ 2.75
VTI1B-201ENST00000216456 MARF1Q9Y4F3 1742 aaKnown RBP32.26■■■□□ 2.75
VTI1B-201ENST00000216456 PSME1Q06323 249 aa32.25■■■□□ 2.75
VTI1B-201ENST00000216456 ANKARQ7Z5J8 1434 aa32.25■■■□□ 2.75
VTI1B-201ENST00000216456 WASLO00401 505 aaPredicted RBP32.23■■■□□ 2.75
VTI1B-201ENST00000216456 STAC3Q96MF2 364 aa32.23■■■□□ 2.75
VTI1B-201ENST00000216456 ARHGEF28Q8N1W1 1705 aaKnown RBP32.22■■■□□ 2.75
VTI1B-201ENST00000216456 NBPF1Q3BBV0 1214 aa32.21■■■□□ 2.75
VTI1B-201ENST00000216456 SBNO1A3KN83 1393 aa32.19■■■□□ 2.74
VTI1B-201ENST00000216456 TULP4Q9NRJ4 1543 aa32.19■■■□□ 2.74
VTI1B-201ENST00000216456 HAP1P54257 671 aaPredicted RBP32.17■■■□□ 2.74
VTI1B-201ENST00000216456 SLIT2O94813 1529 aa32.16■■■□□ 2.74
VTI1B-201ENST00000216456 GJD4Q96KN9 370 aaPredicted RBP32.14■■■□□ 2.74
VTI1B-201ENST00000216456 UNC5CLQ8IV45 518 aa32.13■■■□□ 2.73
VTI1B-201ENST00000216456 SIN3AQ96ST3 1273 aa32.13■■■□□ 2.73
VTI1B-201ENST00000216456 TRPM3Q9HCF6 1732 aaPredicted RBP32.13■■■□□ 2.73
VTI1B-201ENST00000216456 ABCA3Q99758 1704 aa32.12■■■□□ 2.73
VTI1B-201ENST00000216456 ATP7BP35670 1465 aa32.1■■■□□ 2.73
VTI1B-201ENST00000216456 ARHGEF10O15013 1369 aa32.1■■■□□ 2.73
VTI1B-201ENST00000216456 NUDT16Q96DE0 195 aaKnown RBP32.1■■■□□ 2.73
VTI1B-201ENST00000216456 EIF3AQ14152 1382 aaKnown RBP32.09■■■□□ 2.73
VTI1B-201ENST00000216456 NGDNQ8NEJ9 315 aaKnown RBP32.09■■■□□ 2.73
VTI1B-201ENST00000216456 CDK19Q9BWU1 502 aa32.09■■■□□ 2.73
VTI1B-201ENST00000216456 GLI3P10071 1580 aa32.09■■■□□ 2.73
VTI1B-201ENST00000216456 RALGAPBQ86X10 1494 aa32.09■■■□□ 2.73
VTI1B-201ENST00000216456 GPRASP1Q5JY77 1395 aa32.08■■■□□ 2.73
VTI1B-201ENST00000216456 FAM83GA6ND36 823 aa32.07■■■□□ 2.72
VTI1B-201ENST00000216456 L3MBTL2Q969R5 705 aa32.07■■■□□ 2.72
VTI1B-201ENST00000216456 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.06■■■□□ 2.72
VTI1B-201ENST00000216456 KIAA1210Q9ULL0 1709 aa32.06■■■□□ 2.72
VTI1B-201ENST00000216456 ALS2Q96Q42 1657 aa32.05■■■□□ 2.72
VTI1B-201ENST00000216456 PAK3O75914 559 aaPredicted RBP32.05■■■□□ 2.72
VTI1B-201ENST00000216456 ATAD2Q6PL18 1390 aa32.05■■■□□ 2.72
VTI1B-201ENST00000216456 PLCH1Q4KWH8 1693 aa32.04■■■□□ 2.72
VTI1B-201ENST00000216456 EP400Q96L91 3159 aa32.03■■■□□ 2.72
VTI1B-201ENST00000216456 NEUROD1Q13562 356 aa32.02■■■□□ 2.72
VTI1B-201ENST00000216456 VPS72Q15906 364 aa31.98■■■□□ 2.71
VTI1B-201ENST00000216456 NUTM2GQ5VZR2 741 aa31.98■■■□□ 2.71
VTI1B-201ENST00000216456 CCDC9Q9Y3X0 531 aaKnown RBP31.98■■■□□ 2.71
VTI1B-201ENST00000216456 ITSN1Q15811 1721 aa31.95■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms