RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 SLC12A5Q9H2X9 1139 aa10.92□□□□□ -0.66
VAMP3-201ENST00000054666 ESF1Q9H501 851 aaKnown RBP10.92□□□□□ -0.66
VAMP3-201ENST00000054666 YTHDC2Q9H6S0 1430 aaKnown RBP10.92□□□□□ -0.66
VAMP3-201ENST00000054666 POLR3AO14802 1390 aaPredicted RBP10.91□□□□□ -0.66
VAMP3-201ENST00000054666 STK26Q9P289 416 aa10.91□□□□□ -0.66
VAMP3-201ENST00000054666 RBM19Q9Y4C8 960 aaKnown RBP10.91□□□□□ -0.66
VAMP3-201ENST00000054666 ALKQ9UM73 1620 aa10.91□□□□□ -0.66
VAMP3-201ENST00000054666 PTPRMP28827 1452 aa10.91□□□□□ -0.66
VAMP3-201ENST00000054666 MLECQ14165 292 aa10.9□□□□□ -0.66
VAMP3-201ENST00000054666 ATAD2Q6PL18 1390 aa10.9□□□□□ -0.66
VAMP3-201ENST00000054666 SAFB2Q14151 953 aaKnown RBP eCLIP10.9□□□□□ -0.66
VAMP3-201ENST00000054666 SRPK2P78362 688 aaKnown RBP10.89□□□□□ -0.67
VAMP3-201ENST00000054666 POGKQ9P215 609 aa10.89□□□□□ -0.67
VAMP3-201ENST00000054666 PLEKHH1Q9ULM0 1364 aa10.89□□□□□ -0.67
VAMP3-201ENST00000054666 A2ML1A8K2U0 1454 aa10.89□□□□□ -0.67
VAMP3-201ENST00000054666 GOLGA2Q08379 1002 aa10.89□□□□□ -0.67
VAMP3-201ENST00000054666 NGEFQ8N5V2 710 aa10.89□□□□□ -0.67
VAMP3-201ENST00000054666 RIMS2Q9UQ26 1411 aa10.88□□□□□ -0.67
VAMP3-201ENST00000054666 SENP3Q9H4L4 574 aaPredicted RBP10.88□□□□□ -0.67
VAMP3-201ENST00000054666 CABP2Q9NPB3 220 aa10.88□□□□□ -0.67
VAMP3-201ENST00000054666 CCDC146Q8IYE0 955 aa10.88□□□□□ -0.67
VAMP3-201ENST00000054666 CFAP53Q96M91 514 aa10.88□□□□□ -0.67
VAMP3-201ENST00000054666 PRAM1Q96QH2 718 aa10.88□□□□□ -0.67
VAMP3-201ENST00000054666 ZNF521Q96K83 1311 aa10.87□□□□□ -0.67
VAMP3-201ENST00000054666 DLC1Q96QB1 1528 aa10.87□□□□□ -0.67
VAMP3-201ENST00000054666 MINK1Q8N4C8 1332 aaPredicted RBP10.86□□□□□ -0.67
VAMP3-201ENST00000054666 SHPRHQ149N8 1683 aa10.86□□□□□ -0.67
VAMP3-201ENST00000054666 TNNT2P45379 298 aaPredicted RBP10.86□□□□□ -0.67
VAMP3-201ENST00000054666 A0A1W2PP64 1363 aa10.86□□□□□ -0.67
VAMP3-201ENST00000054666 ABCC11Q96J66 1382 aa10.86□□□□□ -0.67
VAMP3-201ENST00000054666 APAF1O14727 1248 aa10.85□□□□□ -0.67
VAMP3-201ENST00000054666 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.85□□□□□ -0.67
VAMP3-201ENST00000054666 TERF2IPQ9NYB0 399 aa10.85□□□□□ -0.67
VAMP3-201ENST00000054666 DUSP27Q5VZP5 1158 aa10.85□□□□□ -0.67
VAMP3-201ENST00000054666 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.85□□□□□ -0.67
VAMP3-201ENST00000054666 ZMYM3Q14202 1370 aa10.85□□□□□ -0.67
VAMP3-201ENST00000054666 SETD1AO15047 1707 aaKnown RBP10.84□□□□□ -0.67
VAMP3-201ENST00000054666 EXOC6Q8TAG9 804 aa10.84□□□□□ -0.67
VAMP3-201ENST00000054666 ANKRD26Q9UPS8 1709 aa10.83□□□□□ -0.68
VAMP3-201ENST00000054666 NKTRP30414 1462 aaKnown RBP10.83□□□□□ -0.68
VAMP3-201ENST00000054666 E9PSI1 815 aa10.83□□□□□ -0.68
VAMP3-201ENST00000054666 HDGFP51858 240 aaKnown RBP10.83□□□□□ -0.68
VAMP3-201ENST00000054666 SLFN5Q08AF3 891 aa10.83□□□□□ -0.68
VAMP3-201ENST00000054666 HDGFL2Q7Z4V5 671 aaPredicted RBP10.83□□□□□ -0.68
VAMP3-201ENST00000054666 TNRQ92752 1358 aa10.83□□□□□ -0.68
VAMP3-201ENST00000054666 MTHFSP49914 203 aa10.82□□□□□ -0.68
VAMP3-201ENST00000054666 MED14O60244 1454 aa10.82□□□□□ -0.68
VAMP3-201ENST00000054666 RUNDC1Q96C34 613 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 NRXN3Q9Y4C0 1643 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 IQSEC2Q5JU85 1478 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 PLIN1O60240 522 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 CDK19Q9BWU1 502 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 KIF20BQ96Q89 1820 aa10.81□□□□□ -0.68
VAMP3-201ENST00000054666 KNDC1Q76NI1 1749 aa10.8□□□□□ -0.68
VAMP3-201ENST00000054666 ATP7BP35670 1465 aa10.8□□□□□ -0.68
VAMP3-201ENST00000054666 FANCIQ9NVI1 1328 aa10.8□□□□□ -0.68
VAMP3-201ENST00000054666 CD163L1Q9NR16 1453 aa10.79□□□□□ -0.68
VAMP3-201ENST00000054666 TRMT2AQ8IZ69 625 aaKnown RBP10.79□□□□□ -0.68
VAMP3-201ENST00000054666 CRBNQ96SW2 442 aa10.79□□□□□ -0.68
VAMP3-201ENST00000054666 GGNBP2Q9H3C7 697 aa10.78□□□□□ -0.68
VAMP3-201ENST00000054666 UBR1Q8IWV7 1749 aa10.78□□□□□ -0.68
VAMP3-201ENST00000054666 WWC1Q8IX03 1113 aa10.78□□□□□ -0.68
VAMP3-201ENST00000054666 U2AF1L5P0DN76 240 aaPredicted RBP10.77□□□□□ -0.68
VAMP3-201ENST00000054666 U2AF1Q01081 240 aaKnown RBP eCLIP10.77□□□□□ -0.68
VAMP3-201ENST00000054666 CPS1P31327 1500 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 NLRP1Q9C000 1473 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 WAPLQ7Z5K2 1190 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 TCP11L2Q8N4U5 519 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 TECPR2O15040 1411 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 FAM135BQ49AJ0 1406 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 TMEM2Q9UHN6 1383 aa10.77□□□□□ -0.69
VAMP3-201ENST00000054666 ADGRB2O60241 1585 aa10.76□□□□□ -0.69
VAMP3-201ENST00000054666 NEUROD2Q15784 382 aa10.76□□□□□ -0.69
VAMP3-201ENST00000054666 CABP1Q9NZU7 370 aa10.76□□□□□ -0.69
VAMP3-201ENST00000054666 FYB1O15117 783 aa10.76□□□□□ -0.69
VAMP3-201ENST00000054666 MYT1Q01538 1121 aa10.76□□□□□ -0.69
VAMP3-201ENST00000054666 NCBP3Q53F19 620 aaKnown RBP10.76□□□□□ -0.69
VAMP3-201ENST00000054666 SPINK5Q9NQ38 1064 aaPredicted RBP10.76□□□□□ -0.69
VAMP3-201ENST00000054666 METP08581 1390 aa10.75□□□□□ -0.69
VAMP3-201ENST00000054666 CCDC27Q2M243 656 aa10.75□□□□□ -0.69
VAMP3-201ENST00000054666 COL3A1P02461 1466 aaPredicted RBP10.75□□□□□ -0.69
VAMP3-201ENST00000054666 MAPK8IP3Q9UPT6 1336 aa10.75□□□□□ -0.69
VAMP3-201ENST00000054666 U2SURPO15042 1029 aaKnown RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 WDR63Q8IWG1 891 aa10.74□□□□□ -0.69
VAMP3-201ENST00000054666 RRP7AQ9Y3A4 280 aaKnown RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 PPIP5K1Q6PFW1 1433 aa10.74□□□□□ -0.69
VAMP3-201ENST00000054666 WASLO00401 505 aaPredicted RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 TCERG1O14776 1098 aaKnown RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 CANXP27824 592 aaKnown RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 C20orf194Q5TEA3 1177 aa10.74□□□□□ -0.69
VAMP3-201ENST00000054666 EDC4Q6P2E9 1401 aaKnown RBP10.74□□□□□ -0.69
VAMP3-201ENST00000054666 SIRT1Q96EB6 747 aa10.73□□□□□ -0.69
VAMP3-201ENST00000054666 TXNDC2Q86VQ3 553 aa10.73□□□□□ -0.69
VAMP3-201ENST00000054666 PNNQ9H307 717 aaKnown RBP10.73□□□□□ -0.69
VAMP3-201ENST00000054666 MYH16Q9H6N6 1097 aa10.73□□□□□ -0.69
VAMP3-201ENST00000054666 DMRT2Q9Y5R5 561 aa10.73□□□□□ -0.69
VAMP3-201ENST00000054666 CDC42BPGQ6DT37 1551 aa10.73□□□□□ -0.69
VAMP3-201ENST00000054666 PLEKHG1Q9ULL1 1385 aa10.72□□□□□ -0.69
VAMP3-201ENST00000054666 ERICH6Q7L0X2 663 aa10.72□□□□□ -0.69
VAMP3-201ENST00000054666 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms