RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 GGNBP2Q9H3C7 697 aa13.85□□□□□ -0.19
USP28-201ENST00000003302 NLRP1Q9C000 1473 aa13.85□□□□□ -0.19
USP28-201ENST00000003302 CANXP27824 592 aaKnown RBP13.84□□□□□ -0.19
USP28-201ENST00000003302 EIF3AQ14152 1382 aaKnown RBP13.83□□□□□ -0.2
USP28-201ENST00000003302 GSE1Q14687 1217 aa13.82□□□□□ -0.2
USP28-201ENST00000003302 CDCA8Q53HL2 280 aa13.82□□□□□ -0.2
USP28-201ENST00000003302 RTEL1-TNFRSF6BF6WH68 1400 aa13.82□□□□□ -0.2
USP28-201ENST00000003302 IFT172Q9UG01 1749 aa13.82□□□□□ -0.2
USP28-201ENST00000003302 ZNF518AQ6AHZ1 1483 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 ASXL2Q76L83 1435 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 EFCAB6Q5THR3 1501 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 U2AF1L5P0DN76 240 aaPredicted RBP13.81□□□□□ -0.2
USP28-201ENST00000003302 U2AF1Q01081 240 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP28-201ENST00000003302 NPC1L1Q9UHC9 1359 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 UHRF1BP1LA0JNW5 1464 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 PDZRN3Q9UPQ7 1066 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 ADGRB1O14514 1584 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 ABCA9Q8IUA7 1624 aa13.81□□□□□ -0.2
USP28-201ENST00000003302 PHF23Q9BUL5 403 aaPredicted RBP13.8□□□□□ -0.2
USP28-201ENST00000003302 SIGLEC1Q9BZZ2 1709 aa13.8□□□□□ -0.2
USP28-201ENST00000003302 KIF1BO60333 1816 aa13.8□□□□□ -0.2
USP28-201ENST00000003302 IQSEC2Q5JU85 1478 aa13.8□□□□□ -0.2
USP28-201ENST00000003302 CD109Q6YHK3 1445 aa13.79□□□□□ -0.2
USP28-201ENST00000003302 POLR3AO14802 1390 aaPredicted RBP13.79□□□□□ -0.2
USP28-201ENST00000003302 C14orf93Q9H972 538 aaKnown RBP13.79□□□□□ -0.2
USP28-201ENST00000003302 FRMPD1Q5SYB0 1578 aa13.79□□□□□ -0.2
USP28-201ENST00000003302 THUMPD2Q9BTF0 503 aaKnown RBP13.79□□□□□ -0.2
USP28-201ENST00000003302 KANK1Q14678 1352 aa13.79□□□□□ -0.2
USP28-201ENST00000003302 PPM1GO15355 546 aaPredicted RBP13.79□□□□□ -0.2
USP28-201ENST00000003302 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.79□□□□□ -0.2
USP28-201ENST00000003302 QRICH2Q9H0J4 1663 aa13.78□□□□□ -0.2
USP28-201ENST00000003302 U2SURPO15042 1029 aaKnown RBP13.78□□□□□ -0.2
USP28-201ENST00000003302 TULP4Q9NRJ4 1543 aa13.78□□□□□ -0.2
USP28-201ENST00000003302 RUNDC1Q96C34 613 aa13.78□□□□□ -0.2
USP28-201ENST00000003302 NRXN1Q9ULB1 1477 aa13.77□□□□□ -0.2
USP28-201ENST00000003302 MYOM2P54296 1465 aa13.77□□□□□ -0.21
USP28-201ENST00000003302 EXOSC9Q06265 439 aaKnown RBP13.77□□□□□ -0.21
USP28-201ENST00000003302 MINK1Q8N4C8 1332 aaPredicted RBP13.77□□□□□ -0.21
USP28-201ENST00000003302 TRIM35Q9UPQ4 493 aa13.77□□□□□ -0.21
USP28-201ENST00000003302 DDRGK1Q96HY6 314 aa13.76□□□□□ -0.21
USP28-201ENST00000003302 IDI1Q13907 227 aa13.76□□□□□ -0.21
USP28-201ENST00000003302 ADGRB3O60242 1522 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 PDE3AQ14432 1141 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 SSH1Q8WYL5 1049 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 USP35Q9P2H5 1018 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 TRIM27P14373 513 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 NCKAP5LQ9HCH0 1330 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 FBXO31Q5XUX0 539 aaPredicted RBP13.75□□□□□ -0.21
USP28-201ENST00000003302 A0A1W2PP64 1363 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 KIAA1210Q9ULL0 1709 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 TBC1D2Q9BYX2 928 aa13.75□□□□□ -0.21
USP28-201ENST00000003302 DAXXQ9UER7 740 aaPredicted RBP13.74□□□□□ -0.21
USP28-201ENST00000003302 ANTXR1Q9H6X2 564 aa13.74□□□□□ -0.21
USP28-201ENST00000003302 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
USP28-201ENST00000003302 ZC3H13Q5T200 1668 aaKnown RBP13.73□□□□□ -0.21
USP28-201ENST00000003302 PLEKHF1Q96S99 279 aa13.73□□□□□ -0.21
USP28-201ENST00000003302 ZRANB1Q9UGI0 708 aa13.73□□□□□ -0.21
USP28-201ENST00000003302 PPLO60437 1756 aa13.73□□□□□ -0.21
USP28-201ENST00000003302 VIRMAQ69YN4 1812 aaKnown RBP13.73□□□□□ -0.21
USP28-201ENST00000003302 C1orf115Q9H7X2 142 aa13.73□□□□□ -0.21
USP28-201ENST00000003302 ELL2O00472 640 aaPredicted RBP13.72□□□□□ -0.21
USP28-201ENST00000003302 CAMSAP1Q5T5Y3 1602 aa13.72□□□□□ -0.21
USP28-201ENST00000003302 SRPK2P78362 688 aaKnown RBP13.72□□□□□ -0.21
USP28-201ENST00000003302 MYO5BQ9ULV0 1848 aa13.71□□□□□ -0.21
USP28-201ENST00000003302 MYO3AQ8NEV4 1616 aa13.71□□□□□ -0.21
USP28-201ENST00000003302 FYB1O15117 783 aa13.71□□□□□ -0.21
USP28-201ENST00000003302 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.21
USP28-201ENST00000003302 GZF1Q9H116 711 aaPredicted RBP13.71□□□□□ -0.22
USP28-201ENST00000003302 GLI2P10070 1586 aa13.7□□□□□ -0.22
USP28-201ENST00000003302 MFAP1P55081 439 aaKnown RBP13.7□□□□□ -0.22
USP28-201ENST00000003302 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.7□□□□□ -0.22
USP28-201ENST00000003302 TMEM57Q8N5G2 664 aa13.7□□□□□ -0.22
USP28-201ENST00000003302 NOB1Q9ULX3 412 aaKnown RBP13.7□□□□□ -0.22
USP28-201ENST00000003302 PHACTR3Q96KR7 559 aa13.7□□□□□ -0.22
USP28-201ENST00000003302 PRAM1Q96QH2 718 aa13.7□□□□□ -0.22
USP28-201ENST00000003302 SMC4Q9NTJ3 1288 aa13.7□□□□□ -0.22
USP28-201ENST00000003302 SBNO2Q9Y2G9 1366 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 TMPOP42166 694 aaKnown RBP13.69□□□□□ -0.22
USP28-201ENST00000003302 WAPLQ7Z5K2 1190 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 HMOX1P09601 288 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 MVPQ14764 893 aaKnown RBP13.69□□□□□ -0.22
USP28-201ENST00000003302 TSPYL6Q8N831 410 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 TBC1D32Q96NH3 1257 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 ITPRIPQ8IWB1 547 aa13.69□□□□□ -0.22
USP28-201ENST00000003302 ARHGEF28Q8N1W1 1705 aaKnown RBP13.68□□□□□ -0.22
USP28-201ENST00000003302 PANK2Q9BZ23 570 aa13.68□□□□□ -0.22
USP28-201ENST00000003302 CD163L1Q9NR16 1453 aa13.68□□□□□ -0.22
USP28-201ENST00000003302 YEATS2Q9ULM3 1422 aa13.67□□□□□ -0.22
USP28-201ENST00000003302 CD2BP2O95400 341 aaKnown RBP13.67□□□□□ -0.22
USP28-201ENST00000003302 ARAP3Q8WWN8 1544 aa13.67□□□□□ -0.22
USP28-201ENST00000003302 DZIP1LQ8IYY4 767 aaKnown RBP13.66□□□□□ -0.22
USP28-201ENST00000003302 LNPKQ9C0E8 428 aa13.66□□□□□ -0.22
USP28-201ENST00000003302 CABP1Q9NZU7 370 aa13.66□□□□□ -0.22
USP28-201ENST00000003302 ABCC3O15438 1527 aa13.66□□□□□ -0.22
USP28-201ENST00000003302 RIPK4P57078 832 aa13.66□□□□□ -0.22
USP28-201ENST00000003302 FTSJ3Q8IY81 847 aaKnown RBP13.66□□□□□ -0.22
USP28-201ENST00000003302 ANKRD36BQ8N2N9 1353 aa13.65□□□□□ -0.22
USP28-201ENST00000003302 WDR63Q8IWG1 891 aa13.65□□□□□ -0.22
USP28-201ENST00000003302 FAM83GA6ND36 823 aa13.65□□□□□ -0.22
USP28-201ENST00000003302 NEXMIFQ5QGS0 1516 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms