RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W PBI2P0CT04 75 aaKnown RBP9.08□□□□□ -0.96
DEP1YAL013W MMS2P53152 137 aa9.08□□□□□ -0.96
DEP1YAL013W YGR121W-AQ3E816 71 aa9.08□□□□□ -0.96
DEP1YAL013W YCR085WP25650 117 aa9.07□□□□□ -0.96
DEP1YAL013W YHR007C-AQ07074 71 aa9.07□□□□□ -0.96
DEP1YAL013W TSC3Q3E790 80 aa9.07□□□□□ -0.96
DEP1YAL013W EDC2P40023 145 aaPredicted RBP9.06□□□□□ -0.96
DEP1YAL013W YLR415CO13578 112 aa9.05□□□□□ -0.96
DEP1YAL013W RPL36BO14455 100 aaKnown RBP9.04□□□□□ -0.96
DEP1YAL013W YOR072WQ08486 104 aa9.04□□□□□ -0.96
DEP1YAL013W SPG1P50088 95 aa9.02□□□□□ -0.97
DEP1YAL013W YBL112CQ3E7Y4 105 aa9.02□□□□□ -0.97
DEP1YAL013W INO4P13902 151 aa8.99□□□□□ -0.97
DEP1YAL013W SKI6P46948 246 aaPredicted RBP8.99□□□□□ -0.97
DEP1YAL013W SLO1Q3E784 85 aa8.99□□□□□ -0.97
DEP1YAL013W YAR1P46683 200 aa8.97□□□□□ -0.97
DEP1YAL013W YJR085CP47131 105 aaKnown RBP8.97□□□□□ -0.97
DEP1YAL013W RSM19P53733 91 aaPredicted RBP8.97□□□□□ -0.97
DEP1YAL013W TDA8Q6B2U8 126 aa8.97□□□□□ -0.97
DEP1YAL013W YHR139C-AO13536 103 aa8.95□□□□□ -0.98
DEP1YAL013W KRE1P17260 313 aa8.95□□□□□ -0.98
DEP1YAL013W RSM18P40033 138 aa8.94□□□□□ -0.98
DEP1YAL013W ICS3P47034 131 aa8.93□□□□□ -0.98
DEP1YAL013W YAL063C-AQ3E791 96 aa8.93□□□□□ -0.98
DEP1YAL013W YMR230W-AQ3E7B5 62 aa8.93□□□□□ -0.98
DEP1YAL013W EDC1P53080 175 aaPredicted RBP8.92□□□□□ -0.98
DEP1YAL013W SHH4Q06236 168 aa8.91□□□□□ -0.98
DEP1YAL013W YHR213W-BQ8TGK1 99 aa8.91□□□□□ -0.98
DEP1YAL013W DDR48P18899 430 aaKnown RBP8.9□□□□□ -0.98
DEP1YAL013W YOR268CQ08734 132 aa8.89□□□□□ -0.99
DEP1YAL013W YJL197C-AP0C5P0 93 aa8.88□□□□□ -0.99
DEP1YAL013W RUB1Q03919 77 aa8.88□□□□□ -0.99
DEP1YAL013W YNL184CP53876 108 aa8.87□□□□□ -0.99
DEP1YAL013W COX23P38824 151 aa8.86□□□□□ -0.99
DEP1YAL013W RAD6P06104 172 aa8.85□□□□□ -0.99
DEP1YAL013W YBR027CP38220 110 aa8.85□□□□□ -0.99
DEP1YAL013W YJL133C-AQ3E7A3 74 aa8.85□□□□□ -0.99
DEP1YAL013W ISD11Q6Q560 94 aa8.85□□□□□ -0.99
DEP1YAL013W YGL149WP53116 101 aa8.83□□□□□ -1
DEP1YAL013W ECM19Q06011 112 aa8.83□□□□□ -1
DEP1YAL013W YFL041W-AQ3E817 63 aa8.83□□□□□ -1
DEP1YAL013W SAP30P38429 201 aa8.82□□□□□ -1
DEP1YAL013W YLR162WQ06235 118 aa8.81□□□□□ -1
DEP1YAL013W YOL014WQ08110 124 aa8.81□□□□□ -1
DEP1YAL013W YEL045CP32616 141 aa8.79□□□□□ -1
DEP1YAL013W TDA2P40045 126 aa8.79□□□□□ -1
DEP1YAL013W RPL38P49167 78 aaKnown RBP8.79□□□□□ -1
DEP1YAL013W MIC10Q96VH5 97 aa8.79□□□□□ -1
DEP1YAL013W YFL065CP43539 102 aa8.78□□□□□ -1
DEP1YAL013W YPR203WQ08994 102 aa8.78□□□□□ -1
DEP1YAL013W EMC6Q12431 108 aa8.78□□□□□ -1
DEP1YAL013W YFL067WP43537 175 aa8.75□□□□□ -1.01
DEP1YAL013W YHL042WP38729 150 aa8.7□□□□□ -1.02
DEP1YAL013W ATP20Q12233 115 aa8.7□□□□□ -1.02
DEP1YAL013W YSY6P38374 65 aa8.68□□□□□ -1.02
DEP1YAL013W YLR285C-AQ3E771 56 aa8.68□□□□□ -1.02
DEP1YAL013W YDR010CQ12426 110 aa8.67□□□□□ -1.02
DEP1YAL013W YCR050CP25630 102 aa8.66□□□□□ -1.02
DEP1YAL013W YOL097W-AQ3E7Y9 61 aa8.66□□□□□ -1.02
DEP1YAL013W RPP2AP05319 106 aaKnown RBP8.64□□□□□ -1.03
DEP1YAL013W COF1Q03048 143 aaKnown RBP8.64□□□□□ -1.03
DEP1YAL013W YLR157W-DP0CE99 70 aa8.62□□□□□ -1.03
DEP1YAL013W YBR182C-AQ8TGU6 64 aa8.62□□□□□ -1.03
DEP1YAL013W KSH1Q8TGJ3 72 aa8.61□□□□□ -1.03
DEP1YAL013W HOT13P36078 116 aa8.6□□□□□ -1.03
DEP1YAL013W KTI11Q3E840 82 aa8.56□□□□□ -1.04
DEP1YAL013W YCR043CP25361 127 aa8.54□□□□□ -1.04
DEP1YAL013W YDR119W-AQ2V2P9 66 aa8.53□□□□□ -1.04
DEP1YAL013W YKL183C-AQ3E765 70 aa8.51□□□□□ -1.05
DEP1YAL013W YOR304C-AO14468 76 aa8.5□□□□□ -1.05
DEP1YAL013W SOH1P38633 127 aa8.5□□□□□ -1.05
DEP1YAL013W YHL018WP38744 120 aaPredicted RBP8.49□□□□□ -1.05
DEP1YAL013W YHL005CP38752 130 aa8.47□□□□□ -1.05
DEP1YAL013W YAR064WP39563 99 aa8.47□□□□□ -1.05
DEP1YAL013W RPL36AP05745 100 aaPredicted RBP8.44□□□□□ -1.06
DEP1YAL013W YPL038W-AQ3E7B4 63 aa8.44□□□□□ -1.06
DEP1YAL013W YGR039WP53225 103 aa8.43□□□□□ -1.06
DEP1YAL013W YDL012CQ12489 107 aa8.41□□□□□ -1.06
DEP1YAL013W YPL080CQ02826 108 aa8.4□□□□□ -1.06
DEP1YAL013W YOR314WQ12506 109 aa8.37□□□□□ -1.07
DEP1YAL013W YDR246W-AQ3E763 66 aa8.37□□□□□ -1.07
DEP1YAL013W YIL002W-AQ3E7Z5 69 aa8.36□□□□□ -1.07
DEP1YAL013W YHR073W-AP0C5N7 58 aa8.35□□□□□ -1.07
DEP1YAL013W NOP10Q6Q547 58 aaPredicted RBP8.34□□□□□ -1.07
DEP1YAL013W YOL013W-AP0C272 63 aaPredicted RBP8.29□□□□□ -1.08
DEP1YAL013W YPR153WQ06537 140 aa8.29□□□□□ -1.08
DEP1YAL013W COX7P10174 60 aa8.28□□□□□ -1.08
DEP1YAL013W YKL069WP36088 180 aa8.24□□□□□ -1.09
DEP1YAL013W LIP1Q03579 150 aa8.24□□□□□ -1.09
DEP1YAL013W YNL122CP53921 115 aaPredicted RBP8.22□□□□□ -1.09
DEP1YAL013W YLR361C-AQ3E795 98 aa8.22□□□□□ -1.09
DEP1YAL013W YOL166W-AQ8TGJ1 51 aa8.22□□□□□ -1.09
DEP1YAL013W YER187WP40102 141 aa8.2□□□□□ -1.1
DEP1YAL013W YIL102CP40488 101 aa8.18□□□□□ -1.1
DEP1YAL013W CMC4Q3E7A9 73 aa8.18□□□□□ -1.1
DEP1YAL013W TOM6P33448 61 aa8.17□□□□□ -1.1
DEP1YAL013W AIM4P38305 123 aaPredicted RBP8.17□□□□□ -1.1
DEP1YAL013W YGR164WP53291 111 aa8.16□□□□□ -1.1
DEP1YAL013W YDR182W-AQ3E796 67 aa8.16□□□□□ -1.1
DEP1YAL013W YOR316C-AQ3E806 69 aa8.14□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms