RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PEBP4Q96S96 227 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 GPR62Q9BZJ7 368 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 UBXN6Q9BZV1 441 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 GDF3Q9NR23 364 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 ZNF446Q9NWS9 450 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 PCDH10Q9P2E7 1040 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 NLRC5Q86WI3 1866 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 VWA8A3KMH1 1905 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 LRRD1A4D1F6 860 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 KIAA0355O15063 1070 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 TTI1O43156 1089 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 ERLIN1O75477 346 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 MYBL2P10244 700 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 CHRNA3P32297 505 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 CETN2P41208 172 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 PTPN9P43378 593 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 GUCY2DQ02846 1103 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 KCTD19Q17RG1 926 aaPredicted RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 ODF2Q5BJF6 829 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 TTC27Q6P3X3 843 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 CCNI2Q6ZMN8 369 aaPredicted RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 TMEM173Q86WV6 379 aaPredicted RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 C12orf50Q8NA57 414 aaPredicted RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 HNRNPLLQ8WVV9 542 aaKnown RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 MAIP1Q8WWC4 291 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 C11orf84Q9BUA3 381 aaPredicted RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 ULBP1Q9BZM6 244 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 ZCWPW1Q9H0M4 648 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 EPB41L5Q9HCM4 733 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 NGRNQ9NPE2 291 aaKnown RBP17.66■□□□□ 0.42
CLN3-252ENST00000636907 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLN3-252ENST00000636907 LTBP2Q14767 1821 aa17.66■□□□□ 0.42
CLN3-252ENST00000636907 KIAA0100Q14667 2235 aaKnown RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 C3orf70A6NLC5 250 aaPredicted RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 HSF2BPO75031 334 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 DGKIO75912 1065 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 KRT10P13645 584 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 CSF2RAP15509 400 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 TFE3P19532 575 aaPredicted RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 PTPN7P35236 360 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 COPS2P61201 443 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 FUT10Q6P4F1 479 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 CYP4V2Q6ZWL3 525 aaPredicted RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 MAATS1Q7Z4T9 603 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 CEP57Q86XR8 500 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 SPATA2LQ8IUW3 424 aaPredicted RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 GSPT2Q8IYD1 628 aaKnown RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 DEFB106AQ8N104 65 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 C1orf54Q8WWF1 131 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 FAM149B1Q96BN6 582 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 B3GALT6Q96L58 329 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 DDX23Q9BUQ8 820 aaKnown RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 ADAM33Q9BZ11 813 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 ARFGAP3Q9NP61 516 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 DMAP1Q9NPF5 467 aaPredicted RBP17.65■□□□□ 0.42
CLN3-252ENST00000636907 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-252ENST00000636907 COL4A6Q14031 1691 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 PTPRDP23468 1912 aa17.65■□□□□ 0.42
CLN3-252ENST00000636907 SF3B1O75533 1304 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-252ENST00000636907 hCG_1818297A0A087WSY0 165 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 ESYT3A0FGR9 886 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 DAB1O75553 588 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 FBXO21O94952 628 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 RAG1P15918 1043 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 FGFR3P22607 806 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 TNFRSF8P28908 595 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 COILP38432 576 aaPredicted RBP17.64■□□□□ 0.42
CLN3-252ENST00000636907 CDKN2BP42772 138 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 DAOAP59103 153 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 DR1Q01658 176 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 ADCY2Q08462 1091 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 SLC39A12Q504Y0 691 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 BEND6Q5SZJ8 279 aaPredicted RBP17.64■□□□□ 0.42
CLN3-252ENST00000636907 KAZNQ674X7 775 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 C4orf50Q6ZRC1 276 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 IFT20Q8IY31 132 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 BCL7CQ8WUZ0 217 aaPredicted RBP17.64■□□□□ 0.42
CLN3-252ENST00000636907 CASKIN2Q8WXE0 1202 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 HSPH1Q92598 858 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 CENPIQ92674 756 aaPredicted RBP17.64■□□□□ 0.42
CLN3-252ENST00000636907 LRRC19Q9H756 370 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 CNGB3Q9NQW8 809 aa17.64■□□□□ 0.42
CLN3-252ENST00000636907 ABHD14A-ACY1A0A1B0GW23 586 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 BHMG1C9JSJ3 638 aaPredicted RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 PRPSAP2O60256 369 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 USP17L7P0C7H9 530 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 CAPN2P17655 700 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 DESP17661 470 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 KDELR1P24390 212 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 MATKP42679 507 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 PTGIRP43119 386 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 HDAC4P56524 1084 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 YWHAZP63104 245 aaKnown RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 DHX34Q14147 1143 aaKnown RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 MRPL58Q14197 206 aaKnown RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 CTXN3Q4LDR2 81 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 TFDP3Q5H9I0 405 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 MFSD5Q6N075 450 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 SCYL2Q6P3W7 929 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 CCDC137Q6PK04 289 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms