RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TBC1D10AQ9BXI6 508 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 NPHS2Q9NP85 383 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 PAK5Q9P286 719 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 A0A0G2JLL6 359 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 DPYSL4O14531 572 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PIAS1O75925 651 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PHKA2P46019 1235 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PTK7Q13308 1070 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PDK2Q15119 407 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 KYAT1Q16773 422 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 MAP1SQ66K74 1059 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PRRT2Q7Z6L0 340 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 CLNKQ7Z7G1 428 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 TTC39CQ8N584 583 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 TAB3Q8N5C8 712 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 SH3TC2Q8TF17 1288 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 RXFP2Q8WXD0 754 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 SERAC1Q96JX3 654 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 HEXIM2Q96MH2 286 aaKnown RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 ANKRD27Q96NW4 1050 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PDZD7Q9H5P4 517 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 ZFP69BQ9UJL9 534 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PTPRFP10586 1907 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 CFAP69A5D8W1 941 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 KBTBD13C9JR72 458 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 LPXNO60711 386 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 ZBTB7AO95365 584 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PDGFRAP16234 1089 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PTPN4P29074 926 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 NRLP54845 237 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 FAAP100Q0VG06 881 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 SLC10A6Q3KNW5 377 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 KBTBD12Q3ZCT8 623 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 TAF1BQ53T94 588 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 WASHC2DQ5SRD0 308 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 SH3PXD2AQ5TCZ1 1133 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 FAM183BPQ6ZVS7 135 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 LINC01465Q8N7H1 131 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PLD5Q8N7P1 536 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 FAM13CQ8NE31 585 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 TEKT4Q8WW24 435 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 PTPRN2Q92932 1015 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 HPDLQ96IR7 371 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 ASCC2Q9H1I8 757 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 GBA2Q9HCG7 927 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 CNTN3Q9P232 1028 aa13.31□□□□□ -0.28
LINC00540-203ENST00000631321 RGS17Q9UGC6 210 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-203ENST00000631321 E7ENQ6 273 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 GOLGA8RI6L899 631 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PRPSAP2O60256 369 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 DIAPH2O60879 1101 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 DNAJC6O75061 913 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 CBX6O95503 412 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PGK2P07205 417 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PFKMP08237 780 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 TGM2P21980 687 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 IL4RP24394 825 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF484Q5JVG2 852 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 GADL1Q6ZQY3 521 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 MTDHQ86UE4 582 aaKnown RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 MAP7D3Q8IWC1 876 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 RFWD2Q8NHY2 731 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 UBA3Q8TBC4 463 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZBTB10Q96DT7 871 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 KLF6Q99612 283 aaPredicted RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 TRIM55Q9BYV6 548 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 C12orf65Q9H3J6 166 aaKnown RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 RNPEPL1Q9HAU8 725 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 SLC5A4Q9NY91 659 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF180Q9UJW8 692 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ITGA11Q9UKX5 1188 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 NUMBLQ9Y6R0 609 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 LOC102724159A0A0B4J2E5 919 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 BCLAF3A2AJT9 711 aaKnown RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 WDR91A4D1P6 747 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF487B1APH4 448 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 KLF11O14901 512 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PEX11AO75192 247 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 INHBAP08476 426 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 GNAZP19086 355 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 NDST1P52848 882 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 MTM1Q13496 603 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 TMEM132DQ14C87 1099 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PRKD1Q15139 912 aaPredicted RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PWP2Q15269 919 aaKnown RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 STILQ15468 1287 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 CCDC14Q49A88 953 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 RAB6CQ53S08 254 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 BOLA3Q53S33 107 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 POTEAQ6S8J7 498 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZC3H18Q86VM9 953 aaKnown RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 LONP2Q86WA8 852 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 SLC26A11Q86WA9 606 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 FBXO16Q8IX29 292 aaPredicted RBP13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PQLC3Q8N755 202 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 COPS5Q92905 334 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 FAF2Q96CS3 445 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF570Q96NI8 536 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 TUBB6Q9BUF5 446 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms