RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 MSS51Q4VC12 460 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 ERMARDQ5T6L9 678 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 RNASEH2BQ5TBB1 312 aaKnown RBP12.97□□□□□ -0.33
CIITA-212ENST00000618207 OLFML1Q6UWY5 402 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 RASAL3Q86YV0 1011 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 CMASQ8NFW8 434 aaPredicted RBP12.97□□□□□ -0.33
CIITA-212ENST00000618207 P3H4Q92791 437 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 NKD2Q969F2 451 aaPredicted RBP12.97□□□□□ -0.33
CIITA-212ENST00000618207 ARHGAP39Q9C0H5 1083 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 PLEKHA5Q9HAU0 1116 aa12.97□□□□□ -0.33
CIITA-212ENST00000618207 CTGFP29279 349 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 DPYSL3Q14195 570 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 PAN2Q504Q3 1202 aaKnown RBP12.96□□□□□ -0.33
CIITA-212ENST00000618207 FNBP1LQ5T0N5 605 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 CYP4V2Q6ZWL3 525 aaPredicted RBP12.96□□□□□ -0.33
CIITA-212ENST00000618207 LRRC34Q8IZ02 419 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 MICALL1Q8N3F8 863 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 APPL2Q8NEU8 664 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 SLC35F5Q8WV83 523 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 KBTBD7Q8WVZ9 684 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 CABS1Q96KC9 395 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 SNRNP25Q9BV90 132 aaKnown RBP12.96□□□□□ -0.33
CIITA-212ENST00000618207 OSBPL7Q9BZF2 842 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 DHX35Q9H5Z1 703 aaKnown RBP12.96□□□□□ -0.33
CIITA-212ENST00000618207 PCDH9Q9HC56 1237 aa12.96□□□□□ -0.33
CIITA-212ENST00000618207 DRG1Q9Y295 367 aaKnown RBP12.96□□□□□ -0.33
CIITA-212ENST00000618207 RASA4BC9J798 803 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 RASA4O43374 803 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 SLC6A3Q01959 620 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 MPP2Q14168 576 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 EFTUD2Q15029 972 aaKnown RBP eCLIP12.96□□□□□ -0.34
CIITA-212ENST00000618207 HIF1AQ16665 826 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 UBXN11Q5T124 520 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 ICE2Q659A1 982 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 APBB1IPQ7Z5R6 666 aaPredicted RBP12.96□□□□□ -0.34
CIITA-212ENST00000618207 NT5DC4Q86YG4 428 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 ATXN2LQ8WWM7 1075 aaKnown RBP12.96□□□□□ -0.34
CIITA-212ENST00000618207 CPT1BQ92523 772 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 KHSRPQ92945 711 aaKnown RBP eCLIP12.96□□□□□ -0.34
CIITA-212ENST00000618207 CHMP6Q96FZ7 201 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 SEC16BQ96JE7 1060 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 SERPINB12Q96P63 405 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 FAM129AQ9BZQ8 928 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 ROPN1BQ9BZX4 212 aaPredicted RBP12.96□□□□□ -0.34
CIITA-212ENST00000618207 STMN4Q9H169 189 aaPredicted RBP12.96□□□□□ -0.34
CIITA-212ENST00000618207 ROPN1Q9HAT0 212 aaPredicted RBP12.96□□□□□ -0.34
CIITA-212ENST00000618207 TMPRSS4Q9NRS4 437 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 GGT7Q9UJ14 662 aa12.96□□□□□ -0.34
CIITA-212ENST00000618207 UNCXA6NJT0 531 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 APOC4-APOC2K7ER74 178 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 AVILO75366 819 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 TMEM63AO94886 807 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 APOC2P02655 101 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 TKTP29401 623 aaKnown RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 CORO7P57737 925 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 DRICH1Q6PGQ1 229 aaPredicted RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 CTU1Q7Z7A3 348 aaKnown RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 C4orf33Q8N1A6 199 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 OTUD6BQ8N6M0 293 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 PRCCQ92733 491 aaPredicted RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 ELAC2Q9BQ52 826 aaKnown RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 CCDC77Q9BR77 488 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 CNTN3Q9P232 1028 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 KCNN4O15554 427 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 HUS1O60921 280 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 KRT15P19012 456 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 MLH1P40692 756 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 TAF6P49848 677 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 ADAM17P78536 824 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 PURAQ00577 322 aaKnown RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 TRIM32Q13049 653 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 CRHR2Q13324 411 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 VSTM1Q6UX27 236 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 ALKAL1Q6UXT8 129 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 CENPUQ71F23 418 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 FAM228AQ86W67 206 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 ADGRF2Q8IZF7 708 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 SMG8Q8ND04 991 aaKnown RBP12.95□□□□□ -0.34
CIITA-212ENST00000618207 PYROXD1Q8WU10 500 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 WNT8BQ93098 351 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 TMEM109Q9BVC6 243 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 RSAD1Q9HA92 442 aa12.95□□□□□ -0.34
CIITA-212ENST00000618207 TTC36A6NLP5 189 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 BEST1O76090 585 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 RGS2P41220 211 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 HDAC4P56524 1084 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 PITX1P78337 314 aaPredicted RBP12.94□□□□□ -0.34
CIITA-212ENST00000618207 ROR1Q01973 937 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 MORF4L2Q15014 288 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 PKDCCQ504Y2 493 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 WSCD1Q658N2 575 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 OSTM1Q86WC4 334 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 FAM131BQ86XD5 332 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 PYROXD2Q8N2H3 581 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 TTC13Q8NBP0 860 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 CCHCR1Q8TD31 782 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 THOC1Q96FV9 657 aaKnown RBP12.94□□□□□ -0.34
CIITA-212ENST00000618207 GAD1Q99259 594 aa12.94□□□□□ -0.34
CIITA-212ENST00000618207 XPO7Q9UIA9 1087 aaKnown RBP12.94□□□□□ -0.34
CIITA-212ENST00000618207 KIAA1257Q9ULG3 409 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms