RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 LRRC19Q9H756 370 aa8.17□□□□□ -1.1
NEK3-207ENST00000617054 TMLHEQ9NVH6 421 aa8.17□□□□□ -1.1
NEK3-207ENST00000617054 GRHL1Q9NZI5 618 aa8.17□□□□□ -1.1
NEK3-207ENST00000617054 PCYOX1Q9UHG3 505 aa8.17□□□□□ -1.1
NEK3-207ENST00000617054 RALGAPA2Q2PPJ7 1873 aa8.17□□□□□ -1.1
NEK3-207ENST00000617054 KBTBD13C9JR72 458 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TRUB2O95900 331 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 IFNB1P01574 187 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 KDELR1P24390 212 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 OR1G1P47890 313 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CDH6P55285 790 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TFDP3Q5H9I0 405 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 EMBQ6PCB8 327 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CLEC20AQ6ZU45 233 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CYP4V2Q6ZWL3 525 aaPredicted RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 TMCO2Q7Z6W1 182 aaPredicted RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 DEFB128Q7Z7B8 93 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 HACE1Q8IYU2 909 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 RCOR2Q8IZ40 523 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 PYROXD2Q8N2H3 581 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 RTP3Q9BQQ7 232 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 UBXN6Q9BZV1 441 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 NPDC1Q9NQX5 325 aaPredicted RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 SLC38A7Q9NVC3 462 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ZNF148Q9UQR1 794 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 NR2E3Q9Y5X4 410 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 hCG_1818297A0A087WSY0 165 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 GABRDO14764 452 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 NRP1O14786 923 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TP73O15350 636 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 UPP2O95045 317 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 BDNFP23560 247 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 HSD17B3P37058 310 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ADCY8P40145 1251 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SERPINB4P48594 390 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 BCAT1P54687 386 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 RNASELQ05823 741 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 CYP1B1Q16678 543 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 DCAF6Q58WW2 860 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SYPL2Q5VXT5 272 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CEP57Q86XR8 500 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SH2D3CQ8N5H7 860 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TOP6BLQ8N6T0 577 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 HLA-CQ95604 372 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TNIP3Q96KP6 325 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 FMO2Q99518 471 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SYT15Q9BQS2 421 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CFHR5Q9BXR6 569 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ZDHHC18Q9NUE0 388 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 WDR35Q9P2L0 1181 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ZNF623O75123 536 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 RNF40O75150 1001 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 AP1G2O75843 785 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CABYRO75952 493 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 USP17L7P0C7H9 530 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 PECAM1P16284 738 aaPredicted RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 WARSP23381 471 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 TNFRSF8P28908 595 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 MAN1A1P33908 653 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 GDF10P55107 478 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 HDAC4P56524 1084 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TAP1Q03518 808 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 NME3Q13232 169 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CUL1Q13616 776 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 DHX34Q14147 1143 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 HADHQ16836 314 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 SDHAF4Q5VUM1 108 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ARHGAP17Q68EM7 881 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 TTC19Q6DKK2 380 aaPredicted RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 PPP1R2P3Q6NXS1 205 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 C1orf228Q6PIY5 440 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 LRRC8DQ7L1W4 858 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 LIMS2Q7Z4I7 341 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ZC3H18Q86VM9 953 aaKnown RBP8.16□□□□□ -1.1
NEK3-207ENST00000617054 FAM131BQ86XD5 332 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 NIPA2Q8N8Q9 360 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 OR10T2Q8NGX3 314 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 STK32AQ8WU08 396 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 CAVIN3Q969G5 261 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SMOQ99835 787 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 DUSP16Q9BY84 665 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 RAB17Q9H0T7 212 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 ASNSD1Q9NWL6 643 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 PLAAQ9Y263 795 aa8.16□□□□□ -1.1
NEK3-207ENST00000617054 SMIM23A6NLE4 172 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 C9IYK1 514 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 SDC4P31431 198 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 CHKAP35790 457 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 TKTL1P51854 596 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 OTUD4Q01804 1114 aaKnown RBP8.15□□□□□ -1.1
NEK3-207ENST00000617054 HSP90B2PQ58FF3 399 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 CFAP58Q5T655 872 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 ZNF598Q86UK7 904 aaKnown RBP8.15□□□□□ -1.1
NEK3-207ENST00000617054 RFX6Q8HWS3 928 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 DEFB106AQ8N104 65 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 TTC39CQ8N584 583 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 CCDC185Q8N715 623 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 EDEM1Q92611 657 aa8.15□□□□□ -1.1
NEK3-207ENST00000617054 RBM41Q96IZ5 413 aaKnown RBP8.15□□□□□ -1.1
NEK3-207ENST00000617054 CNPY3Q9BT09 278 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms