RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 GPR158Q5T848 1215 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SDHAF4Q5VUM1 108 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 IL31Q6EBC2 164 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 TXNDC11Q6PKC3 985 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF852Q6ZMS4 543 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 MFSD6LQ8IWD5 586 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 CRYBG2Q8N1P7 616 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 RIN3Q8TB24 985 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SPATA18Q8TC71 538 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 BAP1Q92560 729 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 DNASE1L2Q92874 299 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 PSMG2Q969U7 264 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 JAKMIP2Q96AA8 810 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF560Q96MR9 790 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SEPT5Q99719 369 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 MRPL45Q9BRJ2 306 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 OXCT2Q9BYC2 517 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 NIF3L1Q9GZT8 377 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SMG9Q9H0W8 520 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ATXN3LQ9H3M9 355 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SLITRK6Q9H5Y7 841 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 FAM124BQ9H5Z6 455 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SMYD3Q9H7B4 428 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 CYP3A43Q9HB55 503 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.3□□□□□ -0.921e-7■■□□□ 12.8
TRIM28-214ENST00000600840 RXFP3Q9NSD7 469 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 RBM12Q9NTZ6 932 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 C2orf42Q9NWW7 574 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 NXF1Q9UBU9 619 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 APEX2Q9UBZ4 518 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ATG2BQ96BY7 2078 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ANAPC1Q9H1A4 1944 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SLC38A8A6NNN8 435 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF263O14978 683 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 HRO43593 1189 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 CILPO75339 1184 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 CHRNB1P11230 501 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 UCHL3P15374 230 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 HMGA1P17096 107 aaKnown RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SPINK2P20155 84 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ACAT1P24752 427 aaKnown RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 RAP1GAPP47736 663 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF132P52740 706 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 JAM2P57087 298 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 TNK2Q07912 1038 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 CETN1Q12798 172 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 LRMPQ12912 555 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 PLD1Q13393 1074 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 CUL2Q13617 745 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SIM2Q14190 667 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ARID5BQ14865 1188 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SF3A2Q15428 464 aaKnown RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FILIP1LQ4L180 1135 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FKBP15Q5T1M5 1219 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FAM171BQ6P995 826 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 UNQ6494/PRO21346Q6UXR6 183 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 RRAGAQ7L523 313 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 VSTM4Q8IW00 320 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 TMEM86AQ8N2M4 240 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 CELF5Q8N6W0 485 aaKnown RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 LEMD2Q8NC56 503 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ANKRD20A12PQ8NF67 263 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 OLIG1Q8TAK6 271 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FAM3CQ92520 227 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SHC3Q92529 594 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 IRF7Q92985 503 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 MRFAP1L1Q96HT8 127 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 NT5C1BQ96P26 610 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 TWNKQ96RR1 684 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ZSWIM1Q9BR11 485 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 SLC46A2Q9BY10 475 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FAM126AQ9BYI3 521 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 LMAN1LQ9HAT1 526 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 UBE2TQ9NPD8 197 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 TRPV5Q9NQA5 729 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ABI2Q9NYB9 513 aaPredicted RBP9.29□□□□□ -0.92
TRIM28-214ENST00000600840 GTSE1Q9NYZ3 720 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 DNAJC12Q9UKB3 198 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 FHOD1Q9Y613 1164 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 PIAS3Q9Y6X2 628 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 ITIH6Q6UXX5 1313 aa9.29□□□□□ -0.92
TRIM28-214ENST00000600840 OTOL1A6NHN0 477 aaPredicted RBP9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CHURC1-FNTBB4DL54 471 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 FOXN3O00409 490 aaPredicted RBP9.28□□□□□ -0.92
TRIM28-214ENST00000600840 TM4SF5O14894 197 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 NCAM2O15394 837 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 LRP3O75074 770 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 ATP2C2O75185 946 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 TADA3O75528 432 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 F11P03951 625 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CYP2F1P24903 491 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CLCN1P35523 988 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 FNTBP49356 437 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 RAD23BP54727 409 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 SATB1Q01826 763 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 FCHO2Q0JRZ9 810 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 AASDHQ4L235 1098 aaPredicted RBP9.28□□□□□ -0.92
TRIM28-214ENST00000600840 Q6ZS52 159 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 PAQR9Q6ZVX9 377 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms