RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	NRDC	O43847	1150 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	GFPT2	O94808	682 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	FGF19	O95750	216 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	PLEK	P08567	350 aa	Predicted RBP	13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	ODC1	P11926	461 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	HNRNPH3	P31942	346 aa	Known RBP	13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	SOX5	P35711	763 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	CXCL12	P48061	93 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	MFAP3	P55082	362 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	FCHO2	Q0JRZ9	810 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	CUL2	Q13617	745 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	LRRC32	Q14392	662 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	SGSM1	Q2NKQ1	1148 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	LAIR1	Q6GTX8	287 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	RAD9B	Q6WBX8	426 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	SPEM1	Q8N4L4	309 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	NIF3L1	Q9GZT8	377 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	NUCKS1	Q9H1E3	243 aa	Known RBP	13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	HSFX1	Q9UBD0	423 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	MYO6	Q9UM54	1294 aa		13.45	□□□□□ -0.26
UPF1-208	ENST00000600012	KIF26A	Q9ULI4	1882 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	CACNA1B	Q00975	2339 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ZNF638	Q14966	1978 aa	Known RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	FOXN3	O00409	490 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	DPYSL4	O14531	572 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	TGM1	P22735	817 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	USP8	P40818	1118 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	KPNA1	P52294	538 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ATXN1	P54253	815 aa	Known RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	LILRA4	P59901	499 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	RBP5	P82980	135 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	GCNT1	Q02742	428 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ARHGAP15	Q53QZ3	475 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	TDRD12	Q587J7	1177 aa	Known RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	C9orf57	Q5W0N0	161 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	HGSNAT	Q68CP4	663 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ITIH5	Q86UX2	942 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ATAD1	Q8NBU5	361 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	SHC3	Q92529	594 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	SYN2	Q92777	582 aa	Predicted RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	PSMG2	Q969U7	264 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	RSPRY1	Q96DX4	576 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	HPDL	Q96IR7	371 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	SENP8	Q96LD8	212 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	OBP2A	Q9NY56	170 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	AIPL1	Q9NZN9	384 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	ARHGAP20	Q9P2F6	1191 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	NXF1	Q9UBU9	619 aa	Known RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	DENND4C	Q5VZ89	1909 aa		13.44	□□□□□ -0.26
UPF1-208	ENST00000600012	SPAG17	Q6Q759	2223 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	SLC38A8	A6NNN8	435 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ARHGAP6	O43182	974 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	LRP3	O75074	770 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	PAPSS2	O95340	614 aa	Predicted RBP	13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	FER	P16591	822 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	TBXAS1	P24557	533 aa	Predicted RBP	13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ATIC	P31939	592 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	CTH	P32929	405 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ASPA	P45381	313 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	RAP1GAP	P47736	663 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	SATB1	Q01826	763 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	GAS6	Q14393	721 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ARHGAP29	Q52LW3	1261 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ZNF667	Q5HYK9	610 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	DGKK	Q5KSL6	1271 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	STXBP5	Q5T5C0	1151 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	GPR158	Q5T848	1215 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	GAREM2	Q75VX8	874 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	IRF2BP2	Q7Z5L9	587 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	RALGPS2	Q86X27	583 aa	Predicted RBP	13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	TMTC1	Q8IUR5	882 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	TTC9B	Q8N6N2	239 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	TAF4B	Q92750	862 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	RTKN	Q9BST9	563 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ATXN3L	Q9H3M9	355 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	PARD6A	Q9NPB6	346 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	DSE	Q9UL01	958 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	SLC27A5	Q9Y2P5	690 aa		13.43	□□□□□ -0.26
UPF1-208	ENST00000600012	ANO9	A1A5B4	782 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	MYBPHL	A2RUH7	354 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	SPECC1L-ADORA2A	F8WAN1	911 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CALCA	P01258	141 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CYP11A1	P05108	521 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	SERPING1	P05155	500 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	RET	P07949	1114 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	KRT5	P13647	590 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CD58	P19256	250 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	ACO1	P21399	889 aa	Known RBP	13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	GABRR2	P28476	465 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CNR2	P34972	360 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	EIF4A3	P38919	411 aa	Known RBP	13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	SOX9	P48436	509 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	TUFM	P49411	452 aa	Known RBP	13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	CDK17	Q00537	523 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	KLHL30	Q0D2K2	578 aa		13.42	□□□□□ -0.26
UPF1-208	ENST00000600012	VEPH1	Q14D04	833 aa		13.42	□□□□□ -0.26

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