RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MEI1Q5TIA1 1274 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 PM20D1Q6GTS8 502 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 MRPL43Q8N983 215 aaKnown RBP16■□□□□ 0.15
TRIM28-209ENST00000597423 CNPY3Q9BT09 278 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 RHOBTB2Q9BYZ6 727 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 ULBP1Q9BZM6 244 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 CYP4F11Q9HBI6 524 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 ALG13Q9NP73 1137 aaKnown RBP16■□□□□ 0.15
TRIM28-209ENST00000597423 RRN3Q9NYV6 651 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16■□□□□ 0.152e-6■■□□□ 11.5
TRIM28-209ENST00000597423 TJP2Q9UDY2 1190 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 TMEM59LQ9UK28 342 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-209ENST00000597423 PRRG1O14668 218 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 CAPN9O14815 690 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 TEX28O15482 410 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 ADAM12O43184 909 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 GABBR2O75899 941 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 MYOGP15173 224 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 COMTP21964 271 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 KLRC2P26717 231 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 RGS19P49795 217 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 CDR1P51861 262 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 CACNA2D1P54289 1103 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 RPL7AP62424 266 aaKnown RBP15.99■□□□□ 0.15
TRIM28-209ENST00000597423 GPM6BQ13491 265 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 VEPH1Q14D04 833 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 TAF12Q16514 161 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 DDR2Q16832 855 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 LLGL2Q6P1M3 1020 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 ELMSAN1Q6PJG2 1045 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 CCDC149Q6ZUS6 474 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 DENND5BQ6ZUT9 1274 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 RTL10Q7L3V2 364 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 BEND5Q7L4P6 421 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 NT5DC3Q86UY8 548 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 TCEAL8Q8IYN2 117 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 NIPA2Q8N8Q9 360 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 RXFP2Q8WXD0 754 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 FAM149B1Q96BN6 582 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 SLC28A3Q9HAS3 691 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 POPDC2Q9HBU9 364 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 DPP7Q9UHL4 492 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 SAR1BQ9Y6B6 198 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 USP3Q9Y6I4 520 aa15.99■□□□□ 0.15
TRIM28-209ENST00000597423 CCDC66A2RUB6 948 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 H3BNC9 293 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 TNFRSF10BO14763 440 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 URI1O94763 535 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 FTCDO95954 541 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 CNPP09543 421 aaKnown RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 USP17L7P0C7H9 530 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 TCP1P17987 556 aaKnown RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 YWHAQP27348 245 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 MATKP42679 507 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 SSR1P43307 286 aaKnown RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 SLC5A3P53794 718 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 DAOAP59103 153 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 HADHQ16836 314 aaKnown RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 PAPD7Q5XG87 772 aaKnown RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 FAM109BQ6ICB4 259 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 MON1AQ86VX9 555 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 TDHQ8IZJ6 230 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 AUTS2Q8WXX7 1259 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 BTBD6Q96KE9 485 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 KLHL5Q96PQ7 755 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 LMAN2LQ9H0V9 348 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 RRAGDQ9NQL2 400 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-209ENST00000597423 MTUS1Q9ULD2 1270 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 STAP1Q9ULZ2 295 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 SCML2Q9UQR0 700 aa15.98■□□□□ 0.15
TRIM28-209ENST00000597423 C2orf71A6NGG8 1288 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 C2CD4BA6NLJ0 364 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 DPYSL4O14531 572 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ENC1O14682 589 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 LTFP02788 710 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 CSH1P0DML2 217 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 CSH2P0DML3 217 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 NOS2P35228 1153 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 PSEN1P49768 467 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 EPHB3P54753 998 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ERVFC1P60507 584 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 CLUL1Q15846 466 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ODF2Q5BJF6 829 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 PPP2R2DQ66LE6 453 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 CC2D1AQ6P1N0 951 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ITIH5Q86UX2 942 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 RHOT1Q8IXI2 618 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 JOSD2Q8TAC2 188 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 PBKQ96KB5 322 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 DDX23Q9BUQ8 820 aaKnown RBP15.97■□□□□ 0.15
TRIM28-209ENST00000597423 PBX4Q9BYU1 374 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ABCC13Q9NSE7 274 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 TMEM30AQ9NV96 361 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 IL37Q9NZH6 218 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 SNX12Q9UMY4 172 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 USTQ9Y2C2 406 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 YBX2Q9Y2T7 364 aaKnown RBP15.97■□□□□ 0.15
TRIM28-209ENST00000597423 HYOU1Q9Y4L1 999 aa15.97■□□□□ 0.15
TRIM28-209ENST00000597423 ASB3Q9Y575 518 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms