RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NAMPTP43490 491 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 TMEM132BQ14DG7 1078 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 TDRPQ86YL5 185 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 TMEM192Q8IY95 271 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 BANPQ8N9N5 519 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 CCDC110Q8TBZ0 833 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 DCAKDQ8WVC6 231 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 CYP4F11Q9HBI6 524 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 ZC3H7BQ9UGR2 993 aaKnown RBP15.9■□□□□ 0.14
UPF1-204ENST00000596842 USP18Q9UMW8 372 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 SNCAIPQ9Y6H5 919 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 MAP3K13O43283 966 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 TBX10O75333 385 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 CXCL8P10145 99 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 EPHB1P54762 984 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 ADGRD1Q6QNK2 874 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 ARFGAP1Q8N6T3 406 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 EFCAB3Q8N7B9 438 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 NAT8LQ8N9F0 302 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 AGR3Q8TD06 166 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 NKD2Q969F2 451 aaPredicted RBP15.9■□□□□ 0.14
UPF1-204ENST00000596842 MYO18AQ92614 2054 aaKnown RBP15.9■□□□□ 0.14
UPF1-204ENST00000596842 USP1O94782 785 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 NUDCD3Q8IVD9 361 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 RNF168Q8IYW5 571 aaPredicted RBP15.9■□□□□ 0.14
UPF1-204ENST00000596842 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.9■□□□□ 0.14
UPF1-204ENST00000596842 POU5F2Q8N7G0 328 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 VCXQ9H320 206 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 CNTNAP2Q9UHC6 1331 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 ZNF831Q5JPB2 1677 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 ANKRD31Q8N7Z5 1873 aa15.9■□□□□ 0.14
UPF1-204ENST00000596842 CXorf49A8MYA2 514 aaPredicted RBP15.89■□□□□ 0.13
UPF1-204ENST00000596842 PRKCBP05771 671 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ATP6V1C1P21283 382 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 VHLP40337 213 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 STAT5BP51692 787 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 AQP5P55064 265 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 CRADDP78560 199 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ZNF667Q5HYK9 610 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 RELL1Q8IUW5 271 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 TEX9Q8N6V9 391 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 SMC1BQ8NDV3 1235 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ATXN7L3BQ96GX2 97 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 OXNAD1Q96HP4 312 aaPredicted RBP15.89■□□□□ 0.13
UPF1-204ENST00000596842 APOL6Q9BWW8 343 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 SYNJ2BP-COX16A0A087WUM0 186 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ZBED1O96006 694 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ERBB2P04626 1255 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 PDGFRAP16234 1089 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 CDK16Q00536 496 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 SGSM1Q2NKQ1 1148 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 C16orf46Q6P387 395 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 DEFB129Q9H1M3 183 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 COX16Q9P0S2 106 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 CORO1CQ9ULV4 474 aaPredicted RBP15.89■□□□□ 0.13
UPF1-204ENST00000596842 ZNF711Q9Y462 761 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 KCNA3P22001 575 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 STXBP2Q15833 593 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 WASHC2DQ5SRD0 308 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 NDUFAF2Q8N183 169 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 ANKRD36BP1Q96IX9 119 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 MIS12Q9H081 205 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 SLC17A6Q9P2U8 582 aa15.89■□□□□ 0.13
UPF1-204ENST00000596842 F7P08709 466 aaPredicted RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 BST1Q10588 318 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 C1orf146Q5VVC0 180 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 TTC13Q8NBP0 860 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 TWNKQ96RR1 684 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 CEP41Q9BYV8 373 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 FARP1Q9Y4F1 1045 aaPredicted RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 NOP56O00567 594 aaKnown RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 PRPSAP2O60256 369 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 ITGB3P05106 788 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 SKIP12755 728 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 RBL1P28749 1068 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 LY6KQ17RY6 165 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 ZC3H12AQ5D1E8 599 aaKnown RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 LRRC74BQ6ZQY2 392 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 FAM83AQ86UY5 434 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 NCAPG2Q86XI2 1143 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■■■■ 32.6
UPF1-204ENST00000596842 USP6NLQ92738 828 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 PIWIL1Q96J94 861 aaKnown RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 MRPL4Q9BYD3 311 aaKnown RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 ACAD9Q9H845 621 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 IL1RAPL1Q9NZN1 696 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 DOCK5Q9H7D0 1870 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 MAP3K7O43318 606 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 PSMG1O95456 288 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 UBAP2LQ14157 1087 aaKnown RBP15.88■□□□□ 0.13
UPF1-204ENST00000596842 ARHGAP22Q7Z5H3 698 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 RSPH3Q86UC2 560 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 BRSK2Q8IWQ3 736 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 CDHR1Q96JP9 859 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 MMP19Q99542 508 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 NRBP2Q9NSY0 501 aa15.88■□□□□ 0.13
UPF1-204ENST00000596842 TM9SF1O15321 606 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 CIB2O75838 187 aa15.87■□□□□ 0.13
UPF1-204ENST00000596842 TCF7P36402 384 aaPredicted RBP15.87■□□□□ 0.13
UPF1-204ENST00000596842 BACE1P56817 501 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms