RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SOX9P48436 509 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 IFNAR2P48551 515 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 RUNX3Q13761 415 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 TPD52L1Q16890 204 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-206ENST00000595974 HECTD3Q5T447 861 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 GPRIN1Q7Z2K8 1008 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 PPM1KQ8N3J5 372 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 OSCP1Q8WVF1 389 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 ATP2A3Q93084 1043 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 JAKMIP2Q96AA8 810 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 SCML2Q9UQR0 700 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 CPQQ9Y646 472 aa17.12■□□□□ 0.33
TRIM28-206ENST00000595974 LEFTY2O00292 366 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 MBL2P11226 248 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 ACO1P21399 889 aaKnown RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 ERCC5P28715 1186 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 SLC8A3P57103 927 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 GCNT1Q02742 428 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 FZD5Q13467 585 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 SGO2Q562F6 1265 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 TRIM68Q6AZZ1 485 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 C1orf210Q8IVY1 113 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 CPA6Q8N4T0 437 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 EHBP1Q8NDI1 1231 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 TTC16Q8NEE8 873 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 TTC8Q8TAM2 541 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 ATOH1Q92858 354 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 RNF38Q9H0F5 515 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 EBF3Q9H4W6 596 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 TLR8Q9NR97 1041 aaKnown RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 DUS2Q9NX74 493 aaKnown RBP17.11■□□□□ 0.33
TRIM28-206ENST00000595974 MYOFQ9NZM1 2061 aa17.11■□□□□ 0.33
TRIM28-206ENST00000595974 COCHO43405 550 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 PAEPP09466 180 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 ARSAP15289 507 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 KIF11P52732 1056 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 BCAT1P54687 386 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 ZXDBP98169 803 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 AMPD2Q01433 879 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 LRRC32Q14392 662 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 EML3Q32P44 896 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 CT47A1Q5JQC4 288 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-206ENST00000595974 TXNDC11Q6PKC3 985 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 CCDC186Q7Z3E2 898 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 FAM114A1Q8IWE2 563 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 ANKRD52Q8NB46 1076 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 GPT2Q8TD30 523 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 UBXN6Q9BZV1 441 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 INTS2Q9H0H0 1204 aaKnown RBP17.1■□□□□ 0.33
TRIM28-206ENST00000595974 CHRDQ9H2X0 955 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 THAP9Q9H5L6 903 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 SPATA6Q9NWH7 488 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-206ENST00000595974 SMPD4Q9NXE4 827 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 HESX1Q9UBX0 185 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 CHORDC1Q9UHD1 332 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-206ENST00000595974 KIAA1257Q9ULG3 409 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 WNT6Q9Y6F9 365 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 VPS13AQ96RL7 3174 aa17.1■□□□□ 0.33
TRIM28-206ENST00000595974 CYP26A1O43174 497 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 TLR5O60602 858 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 NFATC1O95644 943 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 MBD3O95983 291 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 CHRNB1P11230 501 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 VDRP11473 427 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 CD19P15391 556 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 GOLGA7BQ2TAP0 167 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 TMEM270Q6UE05 265 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 RBM43Q6ZSC3 357 aaKnown RBP17.09■□□□□ 0.33
TRIM28-206ENST00000595974 TTC30AQ86WT1 665 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 IRF2BP1Q8IU81 584 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 ARHGEF19Q8IW93 802 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 NACA2Q9H009 215 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 CCSER2Q9H7U1 834 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 ECT2Q9H8V3 914 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 CYLDQ9NQC7 956 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 FAM86C1Q9NVL1 165 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 TSPAN16Q9UKR8 245 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 PCDHB4Q9Y5E5 795 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 USP3Q9Y6I4 520 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 KIAA1549LQ6ZVL6 1849 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 ATG2BQ96BY7 2078 aa17.09■□□□□ 0.33
TRIM28-206ENST00000595974 GTPBP10A4D1E9 387 aaKnown RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 OTOL1A6NHN0 477 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 O00370 1275 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 SLC9A3R1O14745 358 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 LAMTOR5O43504 91 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 MTIF2P46199 727 aaKnown RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 PSEN1P49768 467 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 BST2Q10589 180 aaKnown RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 PON2Q15165 354 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 DGKKQ5KSL6 1271 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 PIGZQ86VD9 579 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 CREBRFQ8IUR6 639 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 KAT5Q92993 513 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 EXOC4Q96A65 974 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 ZFRQ96KR1 1074 aaKnown RBP17.08■□□□□ 0.32
TRIM28-206ENST00000595974 FAM81BQ96LP2 452 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 LMAN1LQ9HAT1 526 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 CFAP97Q9P2B7 532 aa17.08■□□□□ 0.32
TRIM28-206ENST00000595974 FBXO4Q9UKT5 387 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms