RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SIM2Q14190 667 aaPredicted RBP11.13□□□□□ -0.63
LIG3-212ENST00000590181 TXNDC8Q6A555 127 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 SPEM1Q8N4L4 309 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 CPA6Q8N4T0 437 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 USP13Q92995 863 aaPredicted RBP11.13□□□□□ -0.63
LIG3-212ENST00000590181 FAM81BQ96LP2 452 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 CDK5RAP1Q96SZ6 601 aaKnown RBP11.13□□□□□ -0.63
LIG3-212ENST00000590181 B3GNT5Q9BYG0 378 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 GKN1Q9NS71 199 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 GCNT4Q9P109 453 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 ANGPTL2Q9UKU9 493 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 MAPK8IP1Q9UQF2 711 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 KIAA1549LQ6ZVL6 1849 aa11.13□□□□□ -0.63
LIG3-212ENST00000590181 ANKRD11Q6UB99 2663 aaPredicted RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 CHURC1-FNTBB4DL54 471 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 SPECC1L-ADORA2AF8WAN1 911 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 NRG2O14511 850 aaPredicted RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 TRDMT1O14717 391 aaKnown RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 GDF9O60383 454 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 OLFM2O95897 454 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 DRD1P21728 446 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 CTHP32929 405 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 ANP32AP39687 249 aaKnown RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 ASPAP45381 313 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 GCLMP48507 274 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 FNTBP49356 437 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 CYP4F8P98187 520 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 SRSF5Q13243 272 aaKnown RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 CSRP2Q16527 193 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 CT47A1Q5JQC4 288 aaPredicted RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 C1orf220Q5T0J3 134 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 KLHDC10Q6PID8 442 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 OSCP1Q8WVF1 389 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 JAKMIP2Q96AA8 810 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 MED10Q9BTT4 135 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 LMAN1LQ9HAT1 526 aa11.12□□□□□ -0.63
LIG3-212ENST00000590181 TLR8Q9NR97 1041 aaKnown RBP11.12□□□□□ -0.63
LIG3-212ENST00000590181 HELZP42694 1942 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 CCDC163A0A0D9SF12 145 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 E2F8A0AVK6 867 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 TNFRSF10BO14763 440 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 CILPO75339 1184 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 NFATC1O95644 943 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 FAM200BP0CF97 657 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 CHRNB1P11230 501 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 EIF2DP41214 584 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 CXCL12P48061 93 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 NDST1P52848 882 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 MARSP56192 900 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 PPP3CAQ08209 521 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 GOLGA8FQ08AF8 430 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 GOLGA8DPQ0D2H9 430 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 TAF10Q12962 218 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 MTF1Q14872 753 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 AASDHQ4L235 1098 aaPredicted RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 HECTD3Q5T447 861 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 STXBP5Q5T5C0 1151 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 HEATR6Q6AI08 1181 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 ANKRD40Q6AI12 368 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 IL31Q6EBC2 164 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 NUDT18Q6ZVK8 323 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 FAM35AQ86V20 835 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 FUKQ8N0W3 1084 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 ARHGAP18Q8N392 663 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 DDX1Q92499 740 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 CYFIP2Q96F07 1278 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 SMYD3Q9H7B4 428 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 DUS2Q9NX74 493 aaKnown RBP11.11□□□□□ -0.63
LIG3-212ENST00000590181 AKAP13Q12802 2813 aa11.11□□□□□ -0.63
LIG3-212ENST00000590181 MYO16Q9Y6X6 1858 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 FOXD2O60548 495 aaPredicted RBP11.1□□□□□ -0.63
LIG3-212ENST00000590181 AP1G2O75843 785 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 PRAMEF12O95522 483 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 OAS1P00973 400 aaKnown RBP11.1□□□□□ -0.63
LIG3-212ENST00000590181 ZDHHC11BP0C7U3 371 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 CCDC192P0DO97 292 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 IFNAR2P48551 515 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 GPR15P49685 360 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 CDH8P55286 799 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 USP4Q13107 963 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 MORC3Q14149 939 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 GAS6Q14393 721 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 E2F5Q15329 346 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 STILQ15468 1287 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 ZNF77Q15935 545 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 HSF5Q4G112 596 aaPredicted RBP11.1□□□□□ -0.63
LIG3-212ENST00000590181 SCARA3Q6AZY7 606 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 CLEC17AQ6ZS10 378 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 Q6ZS52 159 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 CEP68Q76N32 757 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 ACOT1Q86TX2 421 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 LONP2Q86WA8 852 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 KCNV2Q8TDN2 545 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 TAS1R2Q8TE23 839 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 FBXO32Q969P5 355 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 RSPRY1Q96DX4 576 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 LRRC3BQ96PB8 259 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 DUSP16Q9BY84 665 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 ZNF518BQ9C0D4 1074 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 TRPC7Q9HCX4 862 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms