RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLITRK6Q9H5Y7 841 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 LRRC4Q9HBW1 653 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 TMEM30AQ9NV96 361 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 DDX56Q9NY93 547 aaKnown RBP11.03□□□□□ -0.64
SS18-217ENST00000580958 STIM2Q9P246 746 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 PCSK1NQ9UHG2 260 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 ADAM28Q9UKQ2 775 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 FAN1Q9Y2M0 1017 aa11.03□□□□□ -0.64
SS18-217ENST00000580958 TRIM43BA6NCK2 446 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 C2orf72A6NCS6 295 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SYN3O14994 580 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 KIAA0355O15063 1070 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SART1O43290 800 aaKnown RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 TRAPPC3O43617 180 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 DAB1O75553 588 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 RNF8O76064 485 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SEC31AO94979 1220 aaKnown RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 HEXIM1O94992 359 aaKnown RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 TIMP1P01033 207 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ALDH2P05091 517 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 TUBBP07437 444 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 OR4Q2P0C623 313 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 RALAP11233 206 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 BDNFP23560 247 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ITGB8P26012 769 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 IL1R2P27930 398 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 CETN2P41208 172 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 NDUFV1P49821 464 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 TKTL1P51854 596 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ACAP1Q15027 740 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 PPP2R5EQ16537 467 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 EFHC1Q5JVL4 640 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SH3PXD2AQ5TCZ1 1133 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 FAM171A1Q5VUB5 890 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 MFSD7Q6UXD7 560 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SPOCD1Q6ZMY3 1216 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 POLNQ7Z5Q5 900 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ANKS1BQ7Z6G8 1248 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 RCOR2Q8IZ40 523 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SIX6OS1Q8N1H7 587 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 LRRC43Q8N309 656 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 MAIP1Q8WWC4 291 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 RAPGEF5Q92565 580 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 RUBCNQ92622 972 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 TRIM43Q96BQ3 446 aaPredicted RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 RBM41Q96IZ5 413 aaKnown RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 CFAP57Q96MR6 1250 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 SLITRK1Q96PX8 696 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 PEBP4Q96S96 227 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 KCNK16Q96T55 309 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 HEMGNQ9BXL5 484 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 OSBPL8Q9BZF1 889 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ULBP1Q9BZM6 244 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 ZCWPW1Q9H0M4 648 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 NGRNQ9NPE2 291 aaKnown RBP11.02□□□□□ -0.65
SS18-217ENST00000580958 MTUS1Q9ULD2 1270 aa11.02□□□□□ -0.65
SS18-217ENST00000580958 LRRD1A4D1F6 860 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 CCDC151A5D8V7 595 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 ZSCAN5CA6NGD5 496 aaPredicted RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 NT5C1B-RDH14C9J2C7 533 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 HHLA1C9JL84 531 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 ERLIN1O75477 346 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 FBXO21O94952 628 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 OAZ2O95190 189 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 GALTP07902 379 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 GLI1P08151 1106 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 KRT7P08729 469 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 RAG1P15918 1043 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 MCM3P25205 808 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 CHRNA3P32297 505 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 PCK1P35558 622 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 PBX3P40426 434 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 PTPN9P43378 593 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 MRPS5P82675 430 aaKnown RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 ATP11AP98196 1134 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 MAPRE1Q15691 268 aaKnown RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 CYP1B1Q16678 543 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 SMTNL2Q2TAL5 461 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 SLC39A12Q504Y0 691 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 ODF2Q5BJF6 829 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 TTC27Q6P3X3 843 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 FUT10Q6P4F1 479 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 TMCO3Q6UWJ1 677 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 CEP57Q86XR8 500 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 SPATA2LQ8IUW3 424 aaPredicted RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 GSPT2Q8IYD1 628 aaKnown RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 DCP1BQ8IZD4 617 aaKnown RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 DEFB106AQ8N104 65 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 C12orf50Q8NA57 414 aaPredicted RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 CCDC26Q8TAB7 109 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 FAM172AQ8WUF8 416 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 CASKIN2Q8WXE0 1202 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 MAGOHBQ96A72 148 aaKnown RBP11.01□□□□□ -0.65
SS18-217ENST00000580958 B3GALT6Q96L58 329 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 GPR62Q9BZJ7 368 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 UBXN6Q9BZV1 441 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 GDF3Q9NR23 364 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.01□□□□□ -0.65
SS18-217ENST00000580958 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms