RNA–Protein interactions for RNA: ENST00000577393.1

PPP4R1-204, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-204	ENST00000577393	ACO1	P21399	889 aa	Known RBP	27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CTH	P32929	405 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RUNX3	Q13761	415 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PDGFRL	Q15198	375 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ANGPT1	Q15389	498 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TPD52L1	Q16890	204 aa	Predicted RBP	27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	HECTD3	Q5T447	861 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RALGPS2	Q86X27	583 aa	Predicted RBP	27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	DUS2	Q9NX74	493 aa	Known RBP	27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	DACH1	Q9UI36	760 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CPQ	Q9Y646	472 aa		27.88	■■■□□ 2.05
PPP4R1-204	ENST00000577393	LEFTY2	O00292	366 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ERCC5	P28715	1186 aa	Predicted RBP	27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PGF	P49763	221 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	C1orf228	Q6PIY5	440 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TXNDC11	Q6PKC3	985 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RRAGA	Q7L523	313 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ARHGEF19	Q8IW93	802 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	OSCP1	Q8WVF1	389 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ATOH1	Q92858	354 aa	Predicted RBP	27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	INTS2	Q9H0H0	1204 aa	Known RBP	27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	SMPD4	Q9NXE4	827 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	SCML2	Q9UQR0	700 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	WNT6	Q9Y6F9	365 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PATJ	Q8NI35	1801 aa		27.87	■■■□□ 2.05
PPP4R1-204	ENST00000577393	OTOL1	A6NHN0	477 aa	Predicted RBP	27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	COCH	O43405	550 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	MBL2	P11226	248 aa	Predicted RBP	27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	MAGEA9	P43362	315 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RPS9	P46781	194 aa	Known RBP	27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	SGO2	Q562F6	1265 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TMEM270	Q6UE05	265 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	C1orf210	Q8IVY1	113 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ANKRD52	Q8NB46	1076 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	THAP9	Q9H5L6	903 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CCSER2	Q9H7U1	834 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	FAM86C1	Q9NVL1	165 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PCDHB4	Q9Y5E5	795 aa		27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	HELZ	P42694	1942 aa	Known RBP	27.86	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CYP26A1	O43174	497 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CD19	P15391	556 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	IFNAR2	P48551	515 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TUB	P50607	506 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	KIF11	P52732	1056 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	LMAN1L	Q9HAT1	526 aa		27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TLR8	Q9NR97	1041 aa	Known RBP	27.85	■■■□□ 2.05
PPP4R1-204	ENST00000577393	VDR	P11473	427 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	MTIF2	P46199	727 aa	Known RBP	27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	GCNT1	Q02742	428 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	GOLGA7B	Q2TAP0	167 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	EML3	Q32P44	896 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RBM43	Q6ZSC3	357 aa	Known RBP	27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TTC30A	Q86WT1	665 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PHOX2B	Q99453	314 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CRACR2A	Q9BSW2	395 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	UBXN6	Q9BZV1	441 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	LINC00597	Q9H2U6	94 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	SPATA6	Q9NWH7	488 aa	Predicted RBP	27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TSPAN16	Q9UKR8	245 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	KIAA1257	Q9ULG3	409 aa		27.84	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CACNA1I	Q9P0X4	2223 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	RNF225	M0QZC1	329 aa	Predicted RBP	27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PAEP	P09466	180 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CHRNB1	P11230	501 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PON2	Q15165	354 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	PIGZ	Q86VD9	579 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	KREMEN1	Q96MU8	473 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	ECT2	Q9H8V3	914 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	CFAP97	Q9P2B7	532 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	USP3	Q9Y6I4	520 aa		27.83	■■■□□ 2.05
PPP4R1-204	ENST00000577393	TLR5	O60602	858 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	SLC8A3	P57103	927 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	CT47A1	Q5JQC4	288 aa	Predicted RBP	27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	DDX42	Q86XP3	938 aa	Known RBP eCLIP	27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	FAM114A1	Q8IWE2	563 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	CPA6	Q8N4T0	437 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	TFAP2B	Q92481	460 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	ATP2A3	Q93084	1043 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	CHFR	Q96EP1	664 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	ZFR	Q96KR1	1074 aa	Known RBP	27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	NMUR1	Q9HB89	426 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	OSER1	Q9NX31	292 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	HESX1	Q9UBX0	185 aa		27.82	■■■□□ 2.04
PPP4R1-204	ENST00000577393	MYO16	Q9Y6X6	1858 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393		A0A1W2PQH9	124 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393		O00370	1275 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	BCAT1	P54687	386 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	PDE4C	Q08493	712 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	CCDC186	Q7Z3E2	898 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	KIAA1958	Q8N8K9	716 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	RBBP8NL	Q8NC74	664 aa	Predicted RBP	27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	NACA2	Q9H009	215 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	CHRD	Q9H2X0	955 aa		27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	UBE2T	Q9NPD8	197 aa	Predicted RBP	27.81	■■■□□ 2.04
PPP4R1-204	ENST00000577393	TULP2	O00295	520 aa		27.8	■■■□□ 2.04
PPP4R1-204	ENST00000577393	SCAMP3	O14828	347 aa	Known RBP	27.8	■■■□□ 2.04
PPP4R1-204	ENST00000577393	TBX18	O95935	607 aa		27.8	■■■□□ 2.04
PPP4R1-204	ENST00000577393	SLC9A1	P19634	815 aa		27.8	■■■□□ 2.04
PPP4R1-204	ENST00000577393	HSP90AA4P	Q58FG1	418 aa		27.8	■■■□□ 2.04
PPP4R1-204	ENST00000577393	RAB41	Q5JT25	222 aa		27.8	■■■□□ 2.04

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms