RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PDIA5Q14554 519 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 ZNF174Q15697 407 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 PSMD5Q16401 504 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 PPM1LQ5SGD2 360 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 FAM171A1Q5VUB5 890 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 SDE2Q6IQ49 451 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 MTSS1LQ765P7 747 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 ZNF227Q86WZ6 799 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 CDR2LQ86X02 465 aaPredicted RBP10.13□□□□□ -0.79
CIITA-208ENST00000572665 CEP57Q86XR8 500 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 NOSTRINQ8IVI9 506 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 GSTCDQ8NEC7 633 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 FBXO18Q8NFZ0 1043 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 PPP1R14AQ96A00 147 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 TMEM60Q9H2L4 133 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 PDZD7Q9H5P4 517 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 GPRC5CQ9NQ84 441 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 SLC38A7Q9NVC3 462 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 LRWD1Q9UFC0 647 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 A0A1W2PQU0 124 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 CASTOR2A6NHX0 329 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 TMEM189-UBE2V1I3L0A0 370 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 RFPL2O75678 378 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 RECQL4O94761 1208 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 ITGAVP06756 1048 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 SPATA31D3P0C874 917 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 LAMP2P13473 410 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 GUCY1B3Q02153 619 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 DMP1Q13316 513 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 C2orf27AQ580R0 203 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 ATF7IP2Q5U623 682 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 KRT79Q5XKE5 535 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 LILRA6Q6PI73 481 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 DCLRE1AQ6PJP8 1040 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 SPATA31D4Q6ZUB0 917 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 GET4Q7L5D6 327 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 CCDC83Q8IWF9 413 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 CCDC105Q8IYK2 499 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 SLC44A3Q8N4M1 653 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 ARHGEF39Q8N4T4 335 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 LRRN4CLQ8ND94 238 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 BVESQ8NE79 360 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 THAP3Q8WTV1 239 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 NKD2Q969F2 451 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 TIPINQ9BVW5 301 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 CCDC94Q9BW85 323 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 LGR4Q9BXB1 951 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 DUSP15Q9H1R2 295 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 BHMT2Q9H2M3 363 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 SEMA4AQ9H3S1 761 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 C17orf75Q9HAS0 396 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 CGGBP1Q9UFW8 167 aaPredicted RBP10.12□□□□□ -0.79
CIITA-208ENST00000572665 DNM3Q9UQ16 869 aa10.12□□□□□ -0.79
CIITA-208ENST00000572665 DTNBO60941 627 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 B3GAT3O94766 335 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 C8AP07357 584 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 POU2F2P09086 479 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 FURINP09958 794 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 RTP2Q5QGT7 225 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 CDKAL1Q5VV42 579 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 CWF19L1Q69YN2 538 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 ZC3H14Q6PJT7 736 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 PLD6Q8N2A8 252 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 ENOX1Q8TC92 643 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 ZNF707Q96C28 371 aaPredicted RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 B3GALT6Q96L58 329 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 HDAC8Q9BY41 377 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 MRPL4Q9BYD3 311 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 SMOC2Q9H3U7 446 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 NOL6Q9H6R4 1146 aaKnown RBP10.11□□□□□ -0.79
CIITA-208ENST00000572665 FBXW11Q9UKB1 542 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 TNFSF13BQ9Y275 285 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 GDAQ9Y2T3 454 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 EMC9Q9Y3B6 208 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 CITO14578 2027 aa10.11□□□□□ -0.79
CIITA-208ENST00000572665 TRIOO75962 3097 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 MYH11P35749 1972 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 TRIP11Q15643 1979 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 DOCK8Q8NF50 2099 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 A0A087WWV3 80 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 CCDC169A6NNP5 214 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 PTGESO14684 152 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 FOSL1P15407 271 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 RPL17P18621 184 aaKnown RBP10.1□□□□□ -0.79
CIITA-208ENST00000572665 ELF1P32519 619 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 PRPHP41219 470 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 CLCN7P51798 805 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 PFKPQ01813 784 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 STRN3Q13033 797 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 ANGPT1Q15389 498 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 PRSS55Q6UWB4 352 aaPredicted RBP10.1□□□□□ -0.79
CIITA-208ENST00000572665 LNX1Q8TBB1 728 aaPredicted RBP10.1□□□□□ -0.79
CIITA-208ENST00000572665 HASPINQ8TF76 798 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 BORCS6Q96GS4 357 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 MRGPRX3Q96LB0 322 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 MYADMQ96S97 322 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 TCHPQ9BT92 498 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 ARHGEF3Q9NR81 526 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 SLC2A4RGQ9NR83 387 aa10.1□□□□□ -0.79
CIITA-208ENST00000572665 DDX19AQ9NUU7 478 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms