RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 WDR46O15213 610 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 MGEA5O60502 916 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 RANBP6O60518 1105 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 H2AFYO75367 372 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 TTLL1O95922 423 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 POU2F2P09086 479 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ENO2P09104 434 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 EEF2P13639 858 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 MAPK4P31152 587 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 LSP1P33241 339 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 GUCY1A2P33402 732 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 PEX19P40855 299 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 CASP5P51878 434 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 PSMC1P62191 440 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 JAG1P78504 1218 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 TFAP4Q01664 338 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 DBPQ10586 325 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 IMMTQ16891 758 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 CR1LQ2VPA4 569 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 TTC31Q49AM3 519 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 SLC9C1Q4G0N8 1177 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 RILPL1Q5EBL4 403 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 RNF220Q5VTB9 566 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 VASNQ6EMK4 673 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 MFSD6Q6ZSS7 791 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 CAMKK1Q8N5S9 505 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 MB21D1Q8N884 522 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 PPP1R35Q8TAP8 253 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ZSCAN18Q8TBC5 510 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 ACER1Q8TDN7 264 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 TMEM41AQ96HV5 264 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ZC3H10Q96K80 434 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 GBP4Q96PP9 640 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 RPAP3Q9H6T3 665 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 VCPKMTQ9H867 229 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 PCDH18Q9HCL0 1135 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 EPB41L4AQ9HCS5 686 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 STARD7Q9NQZ5 370 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ARGLU1Q9NWB6 273 aaPredicted RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 CLIP2Q9UDT6 1046 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 SRRDQ9UH36 339 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 L1RE1Q9UN81 338 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ZMYM6O95789 1325 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 RAD50Q92878 1312 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ZNFX1Q9P2E3 1918 aaKnown RBP6.7□□□□□ -1.34
VPS53-212ENST00000572259 PDE4DIPQ5VU43 2346 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 FSD2A1L4K1 749 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 IRAK2O43187 625 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TGM5O43548 720 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 B3GALT2O43825 422 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 DKC1O60832 514 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS53-212ENST00000572259 PRDM1O75626 825 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 FLOT1O75955 427 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TBX18O95935 607 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 MMEP08473 750 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TMEM253P0C7T8 217 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 CAPN2P17655 700 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 CD40P25942 277 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 PTX3P26022 381 aaPredicted RBP6.7□□□□□ -1.34
VPS53-212ENST00000572259 MC3RP41968 323 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 STAT1P42224 750 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 PIK3CBP42338 1070 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 FNTBP49356 437 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 SCAND1P57086 179 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 UBXN2AP68543 259 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TRDNQ13061 729 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 SHROOM1Q2M3G4 852 aaPredicted RBP6.7□□□□□ -1.34
VPS53-212ENST00000572259 AKNAD1Q5T1N1 836 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 BROXQ5VW32 411 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 CD276Q5ZPR3 534 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 IQCA1Q86XH1 822 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TMTC1Q8IUR5 882 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 ESX1Q8N693 406 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 ARL10Q8N8L6 244 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 SMARCC2Q8TAQ2 1214 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 LRTOMTQ8WZ04 291 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 ESR2Q92731 530 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TBC1D31Q96DN5 1066 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 NT5C1BQ96P26 610 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 SPAG5Q96R06 1193 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 FAM167BQ9BTA0 163 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 B3GNT5Q9BYG0 378 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 KRTAP4-9Q9BYQ8 210 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 BTBD1Q9H0C5 482 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 TSPY26PQ9H489 355 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 ELAC1Q9H777 363 aaKnown RBP6.7□□□□□ -1.34
VPS53-212ENST00000572259 ITM2CQ9NQX7 267 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 MRGBPQ9NV56 204 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 MTMR4Q9NYA4 1195 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 HSPBP1Q9NZL4 362 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 MORF4L1Q9UBU8 362 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 STX8Q9UNK0 236 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 GPR34Q9UPC5 381 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 NOC2LQ9Y3T9 749 aaKnown RBP6.7□□□□□ -1.34
VPS53-212ENST00000572259 MYPNQ86TC9 1320 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 ADGRA2Q96PE1 1338 aa6.7□□□□□ -1.34
VPS53-212ENST00000572259 A0A1W2PRG0 241 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 RHPN2P1A8MT19 583 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 B4DLN1 442 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 F5H6K3 240 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms