RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 IL21RQ9HBE5 538 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 MAGEC2Q9UBF1 373 aaPredicted RBP11.84□□□□□ -0.51
VPS53-207ENST00000570510 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS53-207ENST00000570510 SH3BP1Q9Y3L3 701 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 SHROOM3Q8TF72 1996 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 PLXNB3Q9ULL4 1909 aa11.84□□□□□ -0.51
VPS53-207ENST00000570510 A0A0B4J269 797 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 TEX51A0A1B0GUA7 166 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 CYSRT1A8MQ03 144 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 BCAT2O15382 392 aaPredicted RBP11.83□□□□□ -0.52
VPS53-207ENST00000570510 ARHGAP6O43182 974 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 TNFSF14O43557 240 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 NCAM1P13591 858 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 JUPP14923 745 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 SCP2P22307 547 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 CDC25AP30304 524 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 LHX1P48742 406 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 SLC7A9P82251 487 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 KCNC4Q03721 635 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 MYCT1Q8N699 235 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 OTUB2Q96DC9 234 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 GPR174Q9BXC1 333 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 ZHX3Q9H4I2 956 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 KCND2Q9NZV8 630 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 FNDC3AQ9Y2H6 1198 aaKnown RBP11.83□□□□□ -0.52
VPS53-207ENST00000570510 PCDHGB2Q9Y5G2 931 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 KALRNO60229 2985 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 PCDH15Q96QU1 1955 aa11.83□□□□□ -0.52
VPS53-207ENST00000570510 PTPRDP23468 1912 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 DENND4CQ5VZ89 1909 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 FAM189A1O60320 539 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TULP3O75386 442 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 KRT19P08727 400 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 EIF2S3P41091 472 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 NCKAP1LP55160 1127 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 ZXDBP98169 803 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TFAMQ00059 246 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 CYP27A1Q02318 531 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 CAMK2BQ13554 666 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 STARD3Q14849 445 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 MAPRE1Q15691 268 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 INAVAQ3KP66 663 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TDRD10Q5VZ19 366 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 GRAMD4Q6IC98 578 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 SLFN12LQ6IEE8 588 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 DHRS13Q6UX07 377 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 IGSF22Q8N9C0 903 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TERB1Q8NA31 727 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 NSUN7Q8NE18 718 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 CACTINQ8WUQ7 758 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 SNX19Q92543 992 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TOE1Q96GM8 510 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 SLITRK1Q96PX8 696 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 RNF38Q9H0F5 515 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 TOR4AQ9NXH8 423 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 AGO2Q9UKV8 859 aaKnown RBP11.82□□□□□ -0.52
VPS53-207ENST00000570510 AGAP1Q9UPQ3 857 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 NFE2L3Q9Y4A8 694 aa11.82□□□□□ -0.52
VPS53-207ENST00000570510 GOLGA4Q13439 2230 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 A0A1W2PQF6 199 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 E2F8A0AVK6 867 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 ZNF840PA6NDX5 716 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 PP2D1A8MPX8 630 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 FAM13AO94988 1023 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 IL18RAPO95256 599 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 KRT18P05783 430 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 BDNFP23560 247 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 POLR2BP30876 1174 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 ABCD1P33897 745 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 GRK6P43250 576 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 MAGEA11P43364 429 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 IFRD2Q12894 506 aaPredicted RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 SF3A1Q15459 793 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 TEAD4Q15561 434 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 SMAD1Q15797 465 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 DCAF12L1Q5VU92 463 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 EGFLAMQ63HQ2 1017 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 VSTM1Q6UX27 236 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 DTHD1Q6ZMT9 781 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 TMPRSS12Q86WS5 348 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 NT5DC4Q86YG4 428 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 ADGRF2Q8IZF7 708 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 SYT2Q8N9I0 419 aaPredicted RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 CADM4Q8NFZ8 388 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 DNASE2BQ8WZ79 361 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 C8orf76Q96K31 380 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 SPATA17Q96L03 361 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 MRGPRX1Q96LB2 322 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 CEP295NLQ96MC4 621 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 XPO6Q96QU8 1125 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 PLIN2Q99541 437 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 NACA2Q9H009 215 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 SLC6A17Q9H1V8 727 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 FOXP1Q9H334 677 aaPredicted RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 DNAJC17Q9NVM6 304 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 EIF2B4Q9UI10 523 aaKnown RBP11.81□□□□□ -0.52
VPS53-207ENST00000570510 L1RE1Q9UN81 338 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 SNX9Q9Y5X1 595 aa11.81□□□□□ -0.52
VPS53-207ENST00000570510 RAD54BQ9Y620 910 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms