RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SERPINA10Q9UK55 444 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 CLASP2O75122 1294 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 MYBP10242 640 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ITGA4P13612 1032 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 KRT6CP48668 564 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 RPS3AP61247 264 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 ZBTB16Q05516 673 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 EXOC3L4Q17RC7 722 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 TRMT1LQ7Z2T5 733 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 ZNF598Q86UK7 904 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 SLC51BQ86UW2 128 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 PDSS2Q86YH6 399 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 SPOCK2Q92563 424 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 LARP4BQ92615 738 aaKnown RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 C17orf80Q9BSJ5 609 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 KANSL2Q9H9L4 492 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 CYLDQ9NQC7 956 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ABI2Q9NYB9 513 aaPredicted RBP11.27□□□□□ -0.61
CLK3-226ENST00000569406 MAFFQ9ULX9 164 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 ANGPTL3Q9Y5C1 460 aa11.27□□□□□ -0.61
CLK3-226ENST00000569406 XPO1O14980 1071 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 MYO1DO94832 1006 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 ARHGEF15O94989 841 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 KRT10P13645 584 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 CTRB1P17538 263 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 HNRNPH3P31942 346 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 EVI2BP34910 448 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 FKBP1AP62942 108 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 POU5F1Q01860 360 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 TCP10Q12799 353 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 AUHQ13825 339 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 EFTUD2Q15029 972 aaKnown RBP eCLIP11.26□□□□□ -0.614e-7■■■■□ 20.1
CLK3-226ENST00000569406 RPS6KA1Q15418 735 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 NXNQ6DKJ4 435 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 CTRB2Q6GPI1 263 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 XKR5Q6UX68 686 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 PODNQ7Z5L7 613 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 C11orf96Q7Z7L8 435 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 ATL1Q8WXF7 558 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 CALML4Q96GE6 196 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 TP63Q9H3D4 680 aaPredicted RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 GOLPH3Q9H4A6 298 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 SMYD3Q9H7B4 428 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 C10orf88Q9H8K7 445 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 DCTN4Q9UJW0 460 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 PHTF1Q9UMS5 762 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 CFL2Q9Y281 166 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 SIN3BO75182 1162 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 C6orf222P0C671 652 aaPredicted RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 SLC1A4P43007 532 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 GJA9P57773 515 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 LRRC41Q15345 812 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 STRIP1Q5VSL9 837 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 C1orf146Q5VVC0 180 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 UGT2A3Q6UWM9 527 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 RGS9BPQ6ZS82 235 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 SNX32Q86XE0 403 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 GATAD2AQ86YP4 633 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 CNBD2Q96M20 576 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 UROC1Q96N76 676 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 CAAP1Q9H8G2 361 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 GABBR1Q9UBS5 961 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 STK17AQ9UEE5 414 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 PVALEFA0A1B0GWK0 134 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 TRAFD1O14545 582 aaPredicted RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 ITM2AO43736 263 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 NPM3O75607 178 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 ESRRBO95718 433 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 GFAPP14136 432 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 PON1P27169 355 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 NR4A2P43354 598 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 IREB2P48200 963 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 DNM2P50570 870 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 SNAP25P60880 206 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 PPP2R5EQ16537 467 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 INSCQ1MX18 579 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 FIGNQ5HY92 759 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 ADAT2Q7Z6V5 191 aaKnown RBP11.26□□□□□ -0.61
CLK3-226ENST00000569406 BAP1Q92560 729 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 DPF3Q92784 378 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 ATP2A3Q93084 1043 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 DHRS9Q9BPW9 319 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 SCPEP1Q9HB40 452 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 KLHL42Q9P2K6 505 aa11.26□□□□□ -0.61
CLK3-226ENST00000569406 ANKRD62A6NC57 917 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 TRAF5O00463 557 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 NUDT17P0C025 328 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 RBP3P10745 1247 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 KRT5P13647 590 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 TRIP10Q15642 601 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 CARTPTQ16568 116 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 DALRD3Q5D0E6 543 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 GPATCH4Q5T3I0 446 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 ZC3H3Q8IXZ2 948 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 ICA1LQ8NDH6 482 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 ZC3H15Q8WU90 426 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 ZNF277Q9NRM2 450 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 NYAP2Q9P242 653 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 ARHGAP20Q9P2F6 1191 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms